Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2959 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCTACAGAGAATACAAGAGAAGATGCAGTTAAACAGCAACAAACTGATCAAATACTTGGTCAATTTCATAGTCCACATTCTCATACTTCAACTACAACAAATAATAATAATAATAGCAATGGTTCTAACACAGATTTACAACCACCTCTTAAGAAGAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCACTATCACCAACAACACTAATGGCTACAAACAGATTCGTATGTGAAATATGTAACAAGGGTTTTCAAAGAGACCAAAATCTTCAACTGCACCGAAGAGGACACAACTTGCCTTGGAAGCTAAAACAAAGAACTAGTGCAGAAATTAGAAAGAGGGTTTATGTTTGTCCTGAACCTTCATGTGTACACCATAACCCTGCAAGAGCACTTGGTGATCTTACTGGAATTAAAAAGCACTTTTGTAGAAAGCATGGTGAGAAAAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAATATGTGGTACAAGGGAATACAAATGTGACTGTGGAACCATCTTTTCCAGAAGAGACAGCTTCATTACCCACAGAGCATTCTGTGACGCATTGGCTGAAGAGAACAACAAAGCCAACGAAGGAGTACTATCAAACTTGCAACACCAACCAATCTCAAATCTCGTTTCTTCATTACCTTTAAACCCCATTAATAACCCTCAAATTTGTGGAACTGTATCAGAATTCAACAACCATTCAGATCACAAGCTCCCATTATCATCCCCTCATGAACTCATGTCCATGTCTGTGCCACCAAAACCCTTCAATAACAACATATTCACTAGAAGCCTTTCATCATCAACTTCATCTCCTTCTCTTCAACTCAGTTCAAATAATTCACTCAATAATATCTTAGAAGAAAATGGATCACTCCATTTATCTGCTGCAACTTCACCTCACATGTCAGCCACTGCATTGCTACAAAAAGCTGCTCAAATGGGTGCAACTGTGAGTAATAATAATGCAGGTATCATGACTGATAAAACTACCGTTGCTACGAACATGATGGCGCCGCCGCAGTTTGGTTTGGTGCAACAACAAGGACATGCTTTCATGAACCACTACATGCAACAGCAACAACAACATTACAATAATAATTTCAATGCAAATGGGATAATAAATGGAGGTGGTGTTGGAATGAATGGAGTTGATATGTTTAATGCTATATTGGATCAAAGTAAGGCTTTATCGAAGATCATTGAACAAAACAATCAAACTCAAAGCATTAATAGTGTTGTTGGAGGTGGAGGAGGAGGTGCATCAAGTAATAGTAATAATGTTATGAACATTAGTGGAAGTAAGGGTGGTGGAGATGTAATGACACTGGATTTGTTGGGGATAGGAGGAGGAGGTGCACATAGTAATTTCTATGGAGGTGGTACACAACAACAGGCAGAAAGTGCAGCAGCAGCAGCAGCTGATGAGGTTTGGAGAAATTGGTCAACCAAGAATGGAGGGTTTGAATCTTTTTCAGCAACAAGCAACATTTGA 1593 0.3886 MSNITSCDSGSFSTENTREDAVKQQQTDQILGQFHSPHSHTSTTTNNNNNSNGSNTDLQPPLKKKRNLPGNPDPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSAEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGVLSNLQHQPISNLVSSLPLNPINNPQICGTVSEFNNHSDHKLPLSSPHELMSMSVPPKPFNNNIFTRSLSSSTSSPSLQLSSNNSLNNILEENGSLHLSAATSPHMSATALLQKAAQMGATVSNNNAGIMTDKTTVATNMMAPPQFGLVQQQGHAFMNHYMQQQQQHYNNNFNANGIINGGGVGMNGVDMFNAILDQSKALSKIIEQNNQTQSINSVVGGGGGGASSNSNNVMNISGSKGGGDVMTLDLLGIGGGGAHSNFYGGGTQQQAESAAAAAADEVWRNWSTKNGGFESFSATSNI* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2959 530 Gene3D Classic Zinc Finger 147 226 - -
Mtr1g2959 530 Pfam Zinc finger, C2H2 type 92 114 IPR013087 -
Mtr1g2959 530 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Mtr1g2959 530 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Mtr1g2959 530 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 502 - -
Mtr1g2959 530 Gene3D Classic Zinc Finger 71 137 - -
Mtr1g2959 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Mtr1g2959 530 MobiDBLite consensus disorder prediction 1 76 - -
Mtr1g2959 530 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 3 502 - -
Mtr1g2959 530 MobiDBLite consensus disorder prediction 1 61 - -
Mtr1g2959 530 SMART c2h2final6 168 188 IPR013087 -
Mtr1g2959 530 SMART c2h2final6 133 163 IPR013087 -
Mtr1g2959 530 SMART c2h2final6 92 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2959 Mtr-Chr1 40844342 40848324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2959 42 352 IDZ Gene Family AT3G50700 56.176 4.94e-117 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g2959 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2959 - - gmx:100813556 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2959 1 40844342 40848324 Mtr1g2959 1 40844342 40848324 ECH