Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2958 ATGAACGATGAGGGAGATAAAACGTTGCCCATAGCGAATGTGGGTAGAATAATGAAGCAAAATCTTCCTCCCAATGCAAAGATCTCAAAAGAAAGCAAACAGTTGATGCAAGAATGTGCGACAGAATTCATAAGTTTCGTGACAGGTGAAGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAATGGGGACGATATCTGTTGGGCTCTGTGTTCGTTAGGGTTTGACAACTATGCTGAAGCTATTGGAAGGTACTTGTATAAATTCAGACAAGCTGAACTTATTAGAATAAATCAGAACAAACTTCATGAAACTGCAAAAGACAAGTTTGAAGAAGATGCAACAAATCCAAGTACCAAACATAGTAGTCATCGGTAA 384 0.3932 MNDEGDKTLPIANVGRIMKQNLPPNAKISKESKQLMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALCSLGFDNYAEAIGRYLYKFRQAELIRINQNKLHETAKDKFEEDATNPSTKHSSHR* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2958 127 MobiDBLite consensus disorder prediction 107 127 - -
Mtr1g2958 127 Gene3D Histone, subunit A 1 127 IPR009072 GO:0046982
Mtr1g2958 127 PRINTS CCAAT-binding transcription factor subunit A signature 36 54 - -
Mtr1g2958 127 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Mtr1g2958 127 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Mtr1g2958 127 SUPERFAMILY Histone-fold 6 115 IPR009072 GO:0046982
Mtr1g2958 127 ProSitePatterns NF-YB/HAP3 subunit signature. 39 55 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mtr1g2958 127 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 123 - -
Mtr1g2958 127 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 72 IPR003958 -
Mtr1g2958 127 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 123 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2958 Mtr-Chr1 40826986 40827706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2958 1 122 CCAAT-HAP3 Transcription Factor Family AT1G09030 64.286 1.87e-52 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mtr1g2958 CBFD_NFYB_HMF 5.8e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2958 K08065 - pvy:116118424 177.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2958 1 40826986 40827706 Mtr1g2958 1 40826986 40827706 ECH