Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2954 ATGGCACCGACCAGGAAATCCAGAAGTGTGAATAAGCGGTTTAAAAATTCAAATGATATTTCTCCTGAGAAAGATGGAGTTGGCTCAAGTAAAAACAAGCAACGGAAGAAGAAGTTGTCTGATAAATTGGGATCTCAGTGGAGCAAGGGGGAACTAGAGCGATTCTATGAAGCATACAGAAAGCATGGTAAAGATTGGAAGAAGGTGGCTGCCGCTGTTCGTAATAGATCCATTGAAATGGTGGAAGCTCTTTACAATATGAATCGGGCATATCTATCTCTACCAGAGGGAACGGCTTCTGTTGTTGGCCTCATTGCAATGATGACAGATCATTATAATGTCCTGGAAGAGAGTGATAGTGAAAGGGAGAGCAATGATGCACCAGGATCTCGAAAACCTGTGAAACGAAAGCGTGAAAAACTTCAGCTTAATGTCTCAAAGGATCCTGTCCAGTCTCAGTCTGTAACTTCCAGTGATGGTTGCCTCTCTCTACTGAAGAAAAGACGCATTGATGGTCTGCAGCCTCGTGCTGTTGGAAAAAGGACACCGCGGGTCCCAGTTTACCACTCTCAAAAGAAAGATGATAGGGAGAATTATGTTTCGCCTAACAAAAGAAGCTTGAAGTCTACTGTTGATGGTAATGATGACGAAGTTGAACATGTAGCTTTTGCACTAAGCAGGGCTTCACAAAGAGGAGGCTCTCCCCTAGTTTCTCAGACACCACGTAGGAGAGGAGAACAGAAGTTCTCTCCTGCTCAGAGCCGGGATAGAATGCGCCAAATGTCAGAGACAGCTCGTGCCAAGTTTCACAATGCTTCTGTGGATGGAGAGTTTTTGGAAGGTAGTCTTGAAAGCAGGGGAGCTGAAAATGGAGAATATGTTAGAGATACTAGTTCCTTGATGGATATGGAAGGAACGAGCACTGCTGGAGTTCCCAAGGGAGGAAAATTTTACAGAAAGAAAGAAAGAGTGGAAAATGTTGGAAATTATCAGCTTGATGATGGAGGAGAAGCATGCAGCGGCACTGAAGAAGGGCTAAGTTTTAATTCTTTGAAGGAAAATAATATGGAGGTAACTAACGAAAAGCTTGAGCAATTCTCCCCAACAAGTCAGCGGAAAAGAAACAAAAAACTCCTCTTTGGAGGTAATTCTGTTAATAGGGATGTCTTTGGAGATGAAATCCATGCCTTGGATGCTTTGCAAACTTTGGCCGATCTATCTCTAATGATGCCGTCTTCTGAAGTAGAATCTGAATCATGTGTCCAGTTGAAGGGAGAAAGAATGATGGTTGATAAAGATGATAAGTCTGCTTTACCCGAATCAACATCAACAAGCCATAAGAGAAATAAAGTTAAAATTCGTGCGGTCCCTGGACCTGACACTTCAACGTTCAAAAAATCTAAACTCAAGGATATAGCAAATGATACCAATGCTCTCTCTGAATCAAAAGATCAGCTTCCATTTGCTGATAAAACATGGAAGAGAAAGCCAAAGTCCACGGTGTCAAAGGCTGTAGATGATGAGAAAAAAACGGTGATTAAAGGAAAATTCACTGATCAAGTTTTTGCCTCACCAAAACAAATAAAGACGGTCAAACCTTCTGAGGTTTTACTGCGTGCTGATCAGAAAGGTTTTGCAGTATCAACTTCTGAAATTCCACTTTTAAGTGAAGTTAGTTCACCAACTAAAAAAAGTAGACGCAAGATGATTTTTCAGAGACCATCCATGCGTAAAGAGAAGTCTTATGAGAATGTATTGAAAAGTCAACCTAATAAGCACTCTACCCAAAAGGAAAAGCTTTCTAGCTGTTTGTCATCTTATTTGGTTCGCAGATGGTTTACTTCTGAATGGTTTTATAGTGCACTTGATTATCCATGGTTTGCCAAAAGAGAATTTGTGGAGTACTTAAATCATGTTGGACTAGGGAATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCACGCAGGTTTTCGGAACACTTTTTACATGAAGAAAGACAAAAACTTGAACAGTATCGAGAATCGGTGAGGAAACATTATTCTGAGCTGCGGAATGGTATAAGAGATGGACTTCCAACTGATTTGGCAAGACCATTATATGTTGGACAACGTGTAATTGCCATTCACCCCAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACAGTTGACCATGACAAGTGCAGAATTCAGTTTGACCGTCCCCAGTTAGGAGTTGAATTCATCACGGACATTGATTGCATGCCTTTGAATCCATTAGATAATATGCCCGAAGCTTTGAGGAGGCAGATTGGTGCCAGAAAAGCCTCTTTTACGACTATAGAACCACATATTAATGGAAATTCAAGTTTTGGGGGATGTGAAATGCATGCTTCACCTGTGAAGGTACGCCCCTCTTCAAGTGCTTTAGTTAAGCAAGGAAAGGTGGATGCTAACCATGTCACTTCCCAGGCCAATATTGGTAACCTCTGTGCACAAGCTGCCTCTGCTCAACCGTGTAAAGTGATGCAACATCAATCTAAAGAAGCTGATATACATGCACTTTCTGAATTAAAGCGTGCTCTAGATAAAAAGGATACACTATTAGCAGAGCTTCGAAATGCTAATAATGGCATATTGGAAAACCAAAATGGCATAGAATGTTTAAAAGATTCTGAAGGTTTCAAGAAGCATTATGCCACGGTACTTGTAGAGCTAAAGGAAGCCAGTGGACAGGTTTCTGATACCATGCTTCAATTGAGGCAACGCAATACCTACACGGAAACCTCTCTGCCACCATGGATGAAGCCCAAAGCAAATTTCGAAGGCCATGATGACCTTCCTAATATGTTGGATAGTTCTATGACACAAGAGTCTAGGTCAACTGTCATTGAAATCATTAAAGGATCCAGGCTACAGGCACATGCAATGCTGGATGCTGCATTTCAGGCATGGTCTCAAGCTACAAAGGAAGGTAAAGATGCTATTACGAAGATTGGGCAGGCATTGGATTCTATTGATTATCAGCAGTTGTCCTCCAAGTACAGGTCGCCTGTGATAAGGTCTCAAGATCAAGTGAATGGCAGTTATTATCATGCTAATCAGTCGACTTGCAGAGCATCAGAGCCTTTACTTAACGATGCATCTGGTCTGAAACTGCACAAAGATTCTGACGAAGTTGAGATTGAAATACCATTTGAGCTCATCACTTCATGTGTGGCTACATTAACCATGATTCAGAGTTGTACTGAACGGCAATACCCTCCAGCTGATGTGGCTCAGATATTAGATTCTGCCGTTACCAGCCTACAACCGTGCGATACTCGAAACCTTCCTATTTACAGAGAAATTCAAATGTGCATGGGAAGAATTAAGACCCAGATTTTAGCTCTCATCCCTACTTAA 3408 0.4158 MAPTRKSRSVNKRFKNSNDISPEKDGVGSSKNKQRKKKLSDKLGSQWSKGELERFYEAYRKHGKDWKKVAAAVRNRSIEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSERESNDAPGSRKPVKRKREKLQLNVSKDPVQSQSVTSSDGCLSLLKKRRIDGLQPRAVGKRTPRVPVYHSQKKDDRENYVSPNKRSLKSTVDGNDDEVEHVAFALSRASQRGGSPLVSQTPRRRGEQKFSPAQSRDRMRQMSETARAKFHNASVDGEFLEGSLESRGAENGEYVRDTSSLMDMEGTSTAGVPKGGKFYRKKERVENVGNYQLDDGGEACSGTEEGLSFNSLKENNMEVTNEKLEQFSPTSQRKRNKKLLFGGNSVNRDVFGDEIHALDALQTLADLSLMMPSSEVESESCVQLKGERMMVDKDDKSALPESTSTSHKRNKVKIRAVPGPDTSTFKKSKLKDIANDTNALSESKDQLPFADKTWKRKPKSTVSKAVDDEKKTVIKGKFTDQVFASPKQIKTVKPSEVLLRADQKGFAVSTSEIPLLSEVSSPTKKSRRKMIFQRPSMRKEKSYENVLKSQPNKHSTQKEKLSSCLSSYLVRRWFTSEWFYSALDYPWFAKREFVEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLHEERQKLEQYRESVRKHYSELRNGIRDGLPTDLARPLYVGQRVIAIHPKTREIHDGSVLTVDHDKCRIQFDRPQLGVEFITDIDCMPLNPLDNMPEALRRQIGARKASFTTIEPHINGNSSFGGCEMHASPVKVRPSSSALVKQGKVDANHVTSQANIGNLCAQAASAQPCKVMQHQSKEADIHALSELKRALDKKDTLLAELRNANNGILENQNGIECLKDSEGFKKHYATVLVELKEASGQVSDTMLQLRQRNTYTETSLPPWMKPKANFEGHDDLPNMLDSSMTQESRSTVIEIIKGSRLQAHAMLDAAFQAWSQATKEGKDAITKIGQALDSIDYQQLSSKYRSPVIRSQDQVNGSYYHANQSTCRASEPLLNDASGLKLHKDSDEVEIEIPFELITSCVATLTMIQSCTERQYPPADVAQILDSAVTSLQPCDTRNLPIYREIQMCMGRIKTQILALIPT* 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2954 1135 MobiDBLite consensus disorder prediction 187 202 - -
Mtr1g2954 1135 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1135 IPR028306 -
Mtr1g2954 1135 MobiDBLite consensus disorder prediction 116 144 - -
Mtr1g2954 1135 SMART sant 43 91 IPR001005 -
Mtr1g2954 1135 MobiDBLite consensus disorder prediction 26 44 - -
Mtr1g2954 1135 Gene3D - 4 99 - -
Mtr1g2954 1135 Coils Coil 856 879 - -
Mtr1g2954 1135 ProSiteProfiles SANT domain profile. 42 77 IPR017884 -
Mtr1g2954 1135 MobiDBLite consensus disorder prediction 231 247 - -
Mtr1g2954 1135 SUPERFAMILY Homeodomain-like 42 90 IPR009057 -
Mtr1g2954 1135 MobiDBLite consensus disorder prediction 116 158 - -
Mtr1g2954 1135 Pfam DIRP 617 718 IPR033471 -
Mtr1g2954 1135 CDD SANT 47 81 IPR001005 -
Mtr1g2954 1135 PANTHER LIN-9 1 1135 IPR010561 GO:0006351|GO:0017053
Mtr1g2954 1135 MobiDBLite consensus disorder prediction 173 211 - -
Mtr1g2954 1135 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
Mtr1g2954 1135 MobiDBLite consensus disorder prediction 1 44 - -
Mtr1g2954 1135 SMART DIRP_2 618 719 IPR033471 -
Mtr1g2954 1135 Coils Coil 670 690 - -
Mtr1g2954 1135 MobiDBLite consensus disorder prediction 227 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2954 Mtr-Chr1 40787768 40800606 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr1g2954 DIRP 1.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2954 - - gmx:100816217 1592.79