Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2935 ATGGATCATCAAGGTCATGGCCAAAACCCAAATATGGGTGTTGTTGGTAGTGGACAAATGGCCCCATATGGTTCTAATCCATACCAGCCAAACCCTATGACTGGGTCACCTGGGATGGTTGTTCCCTCTGTTGGGACTATTCAACCTGGTGGTCAACCAGATGGAACTCAGCTGGGACAACATCAGCTTGCTTATCAGCACATTCATCAGCAGCAACAGCAGCAGCAGCAACAACAACTCCAGACCTTTTGGGGAAATCAGTATCAAGAAATCGAGAAGGTAACTGATTTCAAAAACCACAGCCTTCCCTTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTGAAGATGATATCAGCTGAGGCGCCTGTTGTATTTGCAAGGGCGTGTGAAATGTTCATATTGGAGTTAACCTTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACCCTTCAAAAGAATGACATTGCAGCAGCAATCACAGGAACTGATATCTTTGATTTCTTGGTTGACATTGTGCCTCGGGAGGACTTGAAAGATGAAGTGCTTGCATCGATACCAAGAGGACCAATGCCTGTTGGAGGGCCTGCTGATGGAATTCCTTATTGCTATATGCCACCTCAAAATGCACAGCAAGCTGGAAATCCTGGTCTCATGATGCATAATCCAAACATGTATGCTCCACAGTCTCATCCGTACATGGCACCTCAAATGTGGCCCCAACCACCGGAGCAACAACAATCGCCTTCAGATCATTAG 771 0.4617 MDHQGHGQNPNMGVVGSGQMAPYGSNPYQPNPMTGSPGMVVPSVGTIQPGGQPDGTQLGQHQLAYQHIHQQQQQQQQQQLQTFWGNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITGTDIFDFLVDIVPREDLKDEVLASIPRGPMPVGGPADGIPYCYMPPQNAQQAGNPGLMMHNPNMYAPQSHPYMAPQMWPQPPEQQQSPSDH* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2935 256 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 256 - -
Mtr1g2935 256 MobiDBLite consensus disorder prediction 233 256 - -
Mtr1g2935 256 Pfam Core histone H2A/H2B/H3/H4 62 164 IPR007125 GO:0003677
Mtr1g2935 256 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Mtr1g2935 256 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 256 - -
Mtr1g2935 256 SUPERFAMILY Histone-fold 69 173 IPR009072 GO:0046982
Mtr1g2935 256 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2935 Mtr-Chr1 40654151 40656539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2935 1 243 CCAAT-HAP5 Transcription Factor Family AT1G08970 65.164 1.20e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mtr1g2935 Histone 1.1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2935 K08066 - gmx:100527803 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3693 7 53883716 53886339 Mtr1g2935 1 40654151 40656539 PCT