Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2931 ATGGATAACTCATATCAAAATGACAAAACTACCCCTCTATGTTTTTTCTTCATCTTCATATTTTTCTCCGGCGTCCCCTTCGCCGGAGCACAAACCAACGACAACACAAATGATAACTCATATTACAACCGTGTAAGCCCTTCCATGGCTATAATAATCGTAATCCTCGTAGCTGCTCTTTTTCTCATGGGTTTCTTCTCAATCTACATCCGTCGATGCGGCGACTCACCTTCCAACAGCATCCGAAACATGGCAGGAGGTTTAGCCGGACGTTCAAGACGGGCGGCGCGTGGTCTCGACGCTTCGGTGATTGCGACTTTCCCGATCTTTGAATACTCGACTGTGAAGATTCATAAAATCGGAAAAGGCGCGTTGGAATGTGCTGTTTGTTTGAACGAGTTTGAAGAGAGTGAAACGCTGCGTTTGATTCCAAAGTGTGATCATGTTTTTCATCCTGAGTGTATTGATGAATGGCTTGGTTCACATACCACTTGTCCGGTTTGCAGAGCTAATTTGGTTCCTCAACCGGGTGAATCGGTTCACGGTATCCCATCGATTAATACCGAACCACAAGATATTGAAGCTCAAAACGACGCTGTTGAATCGGTTCATGAACATCAAAACGCAGACGGTTCTGTAAAAGTCGACCCAACCGAACCAGAAGTGCTGACTGTAAGCCAGACGCTGAACCGGAACCGTACGAGAGGTTCACAGTCTGGTCGGCCACGTTGGTTTCAACGGTCTCATTCAACCGGTCATTCATTGGTTCAACCGGGTGAGAATACTGAACGGTTCACTTTGAGGCTACCAGTTGAAGTGAGGAAACAAATACTACAGAACCCGGAATTGCATAGGGCTAGAAGCTTAGTTGTGTTGCCAAGAGAAACTAGTTCACGTAGGGGTTATCGAACCGGTGGTGGTGAGGGAAGTAGTAGAGGGAAGTCTGTAAGGCGGTTGGACCGGGGTTTATTATCAGACCGGTGGGTTTTTACAATGGCGCCACCTTTCCTTGTAAGAGCCTCGTCGATGAGGTCACCAAGGGTGGCTAGTAGCGCCGGTGAAGGTACATCTGCTTCAGCAGCTACGGCGGCGGTTGTTGAGTCGCCACGGCCACCGGTTTAA 1122 0.4813 MDNSYQNDKTTPLCFFFIFIFFSGVPFAGAQTNDNTNDNSYYNRVSPSMAIIIVILVAALFLMGFFSIYIRRCGDSPSNSIRNMAGGLAGRSRRAARGLDASVIATFPIFEYSTVKIHKIGKGALECAVCLNEFEESETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPQPGESVHGIPSINTEPQDIEAQNDAVESVHEHQNADGSVKVDPTEPEVLTVSQTLNRNRTRGSQSGRPRWFQRSHSTGHSLVQPGENTERFTLRLPVEVRKQILQNPELHRARSLVVLPRETSSRRGYRTGGGEGSSRGKSVRRLDRGLLSDRWVFTMAPPFLVRASSMRSPRVASSAGEGTSASAATAAVVESPRPPV* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2931 373 SMART ring_2 127 168 IPR001841 -
Mtr1g2931 373 Pfam Ring finger domain 126 169 IPR001841 -
Mtr1g2931 373 MobiDBLite consensus disorder prediction 344 363 - -
Mtr1g2931 373 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 316 - -
Mtr1g2931 373 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Mtr1g2931 373 CDD RING-H2_EL5_like 126 169 - -
Mtr1g2931 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 174 IPR013083 -
Mtr1g2931 373 PANTHER RING FINGER DOMAIN-CONTAINING 17 316 - -
Mtr1g2931 373 MobiDBLite consensus disorder prediction 225 261 - -
Mtr1g2931 373 SUPERFAMILY RING/U-box 121 176 - -
Mtr1g2931 373 MobiDBLite consensus disorder prediction 296 317 - -
Mtr1g2931 373 MobiDBLite consensus disorder prediction 342 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2931 Mtr-Chr1 40579470 40580926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2931 12 358 Rapid Response to Elicitors AT3G05200 46.724 1.45e-90 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2931 K10664 - gmx:100810865 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3698 7 53932589 53934114 Mtr1g2931 1 40579470 40580926 PCT