Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2930 ATGTGTTTACCTGAAGAGGAAAGAGATAGAGTGAAAGACATGGCACTAGAAGCAGTGGTTTATCCACAAACACAAGATCCTTTTAGTTATGGAATCAAAGATTTTTACAACTTCAACTTCAACACTCTTGTTGCAAAAGAACAAGAACAAGAACATAGATCTTTCAGTTTTGTAGAAAACCAAACAGAAAATAATTGTCCTCCTTATGTAGATTGGAATAACAACAATAGTTCCACTTTTTCACCACCCCATTTGAATGAAGTTCAAGAAACCACTACTGACCCAAGTAGTAATACTAATAACACTCAAAACTTTCATGCTTCACCTTCTGTGAACACAGTTATTCGTCCAAAAAGGCGAAGAGCTAGAAGCAGGAAAAACAAAGAAGAAATTGAGAATCAGAGAATGACTCACATTGCTGTTGAGCGTAATAGAAGAAAGCAGATGAATGAGTATCTTTCTATTCTTCGCTCTCTAATGCCAGATTCTCACATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGAGCTATTAACTTTGTTAAAGAGCTTGAGCACAAGTTTCATTTTCTTGGTGCTAAGAAAGAAAGAGTGGTGAAATCTGATGAAGCTGGTGGATCAAACAACATGCCATTTTCTGAGTTCTTTACATTTCCACAGTATTCAACAAGTGGTAGTGTGTGTGATAATTCTAATTCTGTAGCTACTATTGGTGAAAAAGTTGGTGAGATTCAATCTTGCATTGCTGACATAGAAGTGACAATGGTGGAAAACCATGCAAATCTTAAAATAAGATCAAGAAAGAGGCCAAAGCAGCTCTTGAAAATTGTATCTGGTTTGCAAAACATGCGTCTCACAATCTTGCATTTAAATGTTACTACTATTGGTGAAATTGTTCTTTACTCTCTCAGTGTTAAGGTTGAAGATGATTGCAAGTTGGGATCGGTGGATGATATAGCTTCAGCTGTATACCAGACGGTCACTAGGATTCAACAAGAGGCAATGTTGAATTAA 1014 0.3659 MCLPEEERDRVKDMALEAVVYPQTQDPFSYGIKDFYNFNFNTLVAKEQEQEHRSFSFVENQTENNCPPYVDWNNNNSSTFSPPHLNEVQETTTDPSSNTNNTQNFHASPSVNTVIRPKRRRARSRKNKEEIENQRMTHIAVERNRRKQMNEYLSILRSLMPDSHIQRGDQASIIGGAINFVKELEHKFHFLGAKKERVVKSDEAGGSNNMPFSEFFTFPQYSTSGSVCDNSNSVATIGEKVGEIQSCIADIEVTMVENHANLKIRSRKRPKQLLKIVSGLQNMRLTILHLNVTTIGEIVLYSLSVKVEDDCKLGSVDDIASAVYQTVTRIQQEAMLN* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2930 337 MobiDBLite consensus disorder prediction 76 129 - -
Mtr1g2930 337 Pfam Helix-loop-helix DNA-binding domain 134 185 IPR011598 GO:0046983
Mtr1g2930 337 SMART finulus 139 190 IPR011598 GO:0046983
Mtr1g2930 337 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 337 - -
Mtr1g2930 337 PANTHER MAX DIMERIZATION, MAD 14 337 - -
Mtr1g2930 337 Gene3D - 119 200 IPR036638 GO:0046983
Mtr1g2930 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 198 IPR036638 GO:0046983
Mtr1g2930 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 184 IPR011598 GO:0046983
Mtr1g2930 337 MobiDBLite consensus disorder prediction 76 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2930 Mtr-Chr1 40534874 40536531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2930 14 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.562 9.21e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g2930 HLH 6.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2930 - - pvu:PHAVU_007G181900g 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3699 7 53954200 53955731 Mtr1g2930 1 40534874 40536531 PCT