Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2927 ATGCTTAAGGTAGCTATGTTACCCTCACCACTTGATTCTTCAACTTCATATCTGAGCACAAGCACCATTGTTTCACTTTGTGTATTCTTCGCACTCCTCTGCGCTTGCATCATCGTTGGCCACCTTCTCGAAGAATATCGATGGGCCAGTGAATCCATTATTGCCCTACTTCTTGGTTTGTGCTCTGGAGTGGTGGTATTGTTGGTGACCAAGTTCCGTAGTACAGAGATTCTAATATTCAACGAAGACTTGTTCTTTCTTTACTTGCTTCCACCAATCATTTTCAATGCCGGTTTCCAAGTCAAGAAGAAACAGTTCTTCAGGAATTTCACTACTATACTTCTGTTTGGAGTCCTTGGGACAGTTATTTCTTTCTGTGTCATATCTGTTGGTGCCTTTTTGCTCTTCAATAGGATTGGCATAACTAACTTGAGCATAAAAGATCACCTAGCCATTGGGGCTATCTTGTCAGCAACTGACTCAGTTTGTACATTACAGGTTCTGAGTCAAGATGAAACACCTTTTCTTTACAGCATTGTATTTGGCGAAGGAGTAGTAAATGATGCCACATCTATCGTTCTTTTCAATTCAGTCCAATCACTTAACTTCGACAGCATTAATGCTATTACAGCTTTAAAATTGTTGGGGACCTTCCTTTACCTCTTTTGCACTAGTACTGCCCTTGGCGTAGTAGTTGGCCTCTTAAGTGCTTATATTATTAAAACACTTTACTTTGGAAGGCACTCTACAGATCGTGAAGTTGCACTTATGATGTTAATGGCATATCTGTCATATATGATCGCTGAGCTTTTGAATCTCAGTGGAATTTTGACGATTTTCTTCTGTGGTATTGTTATGTCACACTACACATGGCATAACGTTACAGGAAGCTCAAGGATAACAACCAAGCACGCATTTGCAACTATCTCATTCATAGCGGAAACCTTTATATTTGTATATGTCGGCATGGAGGCTTTAGACATTGACAAATGGAAAAGAAGCAAGGCCAGCATAGGAACTTCAGTTGCTGTCAGCTCAACATTGATTGCATTAGTTTTGATCGGAAGAGCAGCTTTTGTTTTCCCTATTGCAAACATTGCAAATTGCACCAAAACAAGAGAGAGCACTAAAATTGAGTTTCGATCGCAGTTTATAATATGGTGGGCAGGCCTAATGAGAGGTGCAGTGACCATTGCCTTGTCTTATAATCAGTTTTCAAAATCTGATATAGCATCAGCTGAAGACTCTGCATTAATGATCACCTCAACTATAATCCTTGTCGTATTCAGTACTGTGGTATTTGGTTCCATAACAAAGCCTTTGATTGAGGCTGTGAACTTAAAGCATTCAAAACCAGCCATTTCTGATTCCACCGATAATCAAGAGGATCTAAGACTGCTATTACTTGAAAGCAATAGTTCCATCAACCAAAGCATCAATCAGTCAAATCGAAGACGAAGTAACCTGAGTTTGATGATGCGTTATCCTACTACTACCGTTCACTACTTTTGGAGGAAATTCGATGATAAGTTTATGAGACCTGTATTTGGTGGTAGAGGTTTTGTTCCAGTTGTTCCTGGTTCACCGCATGTTGAAGAGGATATTTCTTGA 1611 0.3973 MLKVAMLPSPLDSSTSYLSTSTIVSLCVFFALLCACIIVGHLLEEYRWASESIIALLLGLCSGVVVLLVTKFRSTEILIFNEDLFFLYLLPPIIFNAGFQVKKKQFFRNFTTILLFGVLGTVISFCVISVGAFLLFNRIGITNLSIKDHLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNSVQSLNFDSINAITALKLLGTFLYLFCTSTALGVVVGLLSAYIIKTLYFGRHSTDREVALMMLMAYLSYMIAELLNLSGILTIFFCGIVMSHYTWHNVTGSSRITTKHAFATISFIAETFIFVYVGMEALDIDKWKRSKASIGTSVAVSSTLIALVLIGRAAFVFPIANIANCTKTRESTKIEFRSQFIIWWAGLMRGAVTIALSYNQFSKSDIASAEDSALMITSTIILVVFSTVVFGSITKPLIEAVNLKHSKPAISDSTDNQEDLRLLLLESNSSINQSINQSNRRRSNLSLMMRYPTTTVHYFWRKFDDKFMRPVFGGRGFVPVVPGSPHVEEDIS* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2927 536 PANTHER SODIUM/HYDROGEN EXCHANGER 11 535 - -
Mtr1g2927 536 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Mtr1g2927 536 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Mtr1g2927 536 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Mtr1g2927 536 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Mtr1g2927 536 Pfam Sodium/hydrogen exchanger family 29 443 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Mtr1g2927 536 Gene3D - 145 197 - -
Mtr1g2927 536 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 24 457 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Mtr1g2927 536 PANTHER SODIUM/HYDROGEN EXCHANGER 11 535 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2927 Mtr-Chr1 40506251 40510581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2927 14 529 Antiporters AT3G05030 61.905 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2927 K14724 - vvi:100264772 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2927 1 40506251 40510581 Mtr1g2927 1 40506251 40510581 ECH