Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2909 ATGGGTTGTGTAATAAGCCGAGAAGTGGAATCAGGTATTGTGTCTGAGGTGAAGGAAGAGAAGAATTCGAGAGCTGAGTCGAGCAAGAGGGTTGAAGAAGTTTCGACGAGTAGAGCTGAGGGAAGTGTGGTAGAGGTTCAGAATGGCGAGAAGGCGAAGAAGGTCAAGGAGAAGGAAGAGAAGAGTGACGGTGATGGGGTTCAGCGGCCGAAGGGTGAGAGAAGAAGATCAAAGCCAAACCCGAGGTTGAGTAACCCGCCAAAGAATTTGCAAGGGGAGCAAGTAGCAGCTGGATGGCCGTCTTGGCTTACAGCAGTTTGTGGGGAAGCCCTTAATGGGTGGATTCCACGGAAGGCTGATACATTCGAGAAAATAGATAAGATCGGTCAAGGAACATATAGTAATGTGTACAAAGCTAAAGATTTAATAACGGGTAAGATTGTTGCATTGAAGAAGGTTCGATTTGACAATTTGGAACCCGAGAGTGTAAAATTCATGGCTAGAGAGATCCTTATACTGCGAAGATTGGATCATCCCAATGTTATAAAGTTAGAAGGTTTAGTTACATCTAGAATGTCATGGAGTTTGTATCTGGTGTTTGAATACATGGTACATGATTTAGCTGGACTTGCTGCAAGCCCTGACATCAAGTTCACAGAGCCTCAGGTAAAATGTTACATGCATCAACTGCTATCAGGACTGGAGCACTGTCATAATAGACATGTACTTCACCGCGATATCAAAGGATCAAATCTTCTGATTGACAATGAAGGAATACTCAAAATTGCTGACTTTGGGCTTGCATCTTTCTTCGATCCAACCCGTAGGCATCCTATGACAAATCGTGTGGTTACCCTTTGGTACCGGCCTCCTGAGCTGCTTCTCGGTGCCACAGATTATGGTGTGGGTGTGGACCTTTGGAGTGCCGGTTGCATTTTAGGAGAGTTATTGTATGGGAAACCAATTATGCCTGGTCGTACAGAGGTGGAACAACTGCATAAGATATACAAGCTTTGTGGTTCACCTTCGGATGAGTATTGGAAGAAGTCAAAATTGCCTAATGCTACCTTGTTCAAACCTCGAGAGCCATACAAAAGATGCATAAGAGATGTATTTAAAGATTTTCCACCTTCTGCTCTTCCTCTTGTCGATACTCTTCTTGCAATTGATCCAATAGAACGGAGGAGTGCCTCAGATGCTCTAAGAAGTGAGTTCTTTAACACAGAACCTTATGCCTGTGATCCTTCTAGTCTTCCAAAGTATCCCCCAACCAAGGAAATGGATGTTAAACGGCGTGACGATGAAGCAAGAAGATCAAGAGCTGCAGCCAAAGCTCGAGCTGATGGAGGAAAGAAGCATCGGACACGTGACCGGGCTGTAAAAGCTGCTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATACAATATCGATCAGAGAAGGCGTCTAATCACTCATGCTAATGCTAAGAGCAAAAGTGAAAAGTTTCCTCCGCCGCATGAAGATGGACAACTTGGATTTCCTTTGGGAGCTTCAAATCATATTGATCCAGATATAGTTCCTCATGATGTCTCTTTGGATTCAATGTCATATACCTTTTCAAAGGAACCATTTCAAGCTTATTCAGGTCCCATAGGTAATACTACTAGCAATGGTTTCACAAAGCGGAAGAAAAACACTGCGAACGATGCATTGGATTTATCAAAACCATATAAAGGAACCCACAAGGATAAGGGTAAAGGAAAGAAAATCATAGCTTAA 1758 0.4357 MGCVISREVESGIVSEVKEEKNSRAESSKRVEEVSTSRAEGSVVEVQNGEKAKKVKEKEEKSDGDGVQRPKGERRRSKPNPRLSNPPKNLQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDLITGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSWSLYLVFEYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGILKIADFGLASFFDPTRRHPMTNRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLYGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRDVFKDFPPSALPLVDTLLAIDPIERRSASDALRSEFFNTEPYACDPSSLPKYPPTKEMDVKRRDDEARRSRAAAKARADGGKKHRTRDRAVKAAPAPEANAELQYNIDQRRRLITHANAKSKSEKFPPPHEDGQLGFPLGASNHIDPDIVPHDVSLDSMSYTFSKEPFQAYSGPIGNTTSNGFTKRKKNTANDALDLSKPYKGTHKDKGKGKKIIA* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2909 585 Gene3D Transferase(Phosphotransferase) domain 1 205 446 - -
Mtr1g2909 585 PANTHER CELL DIVISION PROTEIN KINASE 46 560 - -
Mtr1g2909 585 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Mtr1g2909 585 SMART serkin_6 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2909 585 MobiDBLite consensus disorder prediction 47 80 - -
Mtr1g2909 585 Pfam Protein kinase domain 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2909 585 MobiDBLite consensus disorder prediction 424 461 - -
Mtr1g2909 585 PANTHER OS01G0367700 PROTEIN 46 560 - -
Mtr1g2909 585 MobiDBLite consensus disorder prediction 543 557 - -
Mtr1g2909 585 MobiDBLite consensus disorder prediction 558 573 - -
Mtr1g2909 585 ProSiteProfiles Protein kinase domain profile. 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2909 585 CDD STKc_CDK9_like 122 406 - -
Mtr1g2909 585 MobiDBLite consensus disorder prediction 414 466 - -
Mtr1g2909 585 MobiDBLite consensus disorder prediction 1 94 - -
Mtr1g2909 585 SUPERFAMILY Protein kinase-like (PK-like) 116 412 IPR011009 -
Mtr1g2909 585 MobiDBLite consensus disorder prediction 12 36 - -
Mtr1g2909 585 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Mtr1g2909 585 MobiDBLite consensus disorder prediction 543 585 - -
Mtr1g2909 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2909 Mtr-Chr1 40331109 40338384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2909 114 444 Core Cell Cycle Gene Families AT5G10270 52.738 6.90e-121 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Mtr1g2909 Pkinase 3.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2909 K08819 - gmx:100817289 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2909 1 40331109 40338384 Mtr7g3724 7 54209434 54215112 ECH
Mtr1g2909 1 40331109 40338384 Mtr1g2909 1 40331109 40338384 ECH
Mtr7g3724 7 54209434 54215112 Mtr1g2909 1 40331109 40338384 PCT