Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2902 ATGACAGTTATGATTTATAGGCAGTGTACAGAAGGTGCAAATGGTGATGAGGTTTTAGCTGACACAAATAAAGAATGTAAACATGATTATCGATTGGATGAACAAATTGGAATATACTGCCGTACATGCGGCTTTGTGAAAACTGAGATACGATACATTTCTGAACCCATTGTGGAAAGGCTAAAATGGTACGAACAGAAGAAACAACGCAGTGAAGATACGGAACAAGTTGATGAAGATGTTAATAATGATACGTTCTCAACTGATGCTACTGATCTTGGTGAACCAATATCCAAAGAAAATGATAGTGTTTGGGAATTGATTCCTGAACTCAAAGAAAACATGCATGCACACCAGAAAAAAGCTTTTGAATTTCTCTGGAAGAACATTGCAGGGTCTATGGAGCAATCACTCATGGAAGAAAAATCTAACACAAGTGGTGGCTGTGTTATATCTCATGCTCCTGGAGCTGGAAAAACCTTTCTCATCATCTCTTTTCTTGTAAGCTATTTGAAATTATTTCCAGAGAAAAGACCATTGGTCCTAGCTCCAAAGACCACACTCTACACATGGCAAAAAGAGTTCGAAAAATGGAATATTCCCATGCCGGTGTATCTTATCCACAGCAGTCAAACCCAGAGACATTCGATGACACCAAAATCAGTGGTTCTACCTGGAGTTTCAAATTCTAATGGTGTCAAGCATGATTTTGATTGTCTACAAAAGATCAAAAGCTGGAATTCACACCCTAGTGTTCTTGTCATGGGCTATTCCTCATTTTTAGCCTTAATGAGAACAGAAGATAAAAAAAATTCACACAGAAAGCGCACGGCTAAAGCATTGAGGGAAAGTCCCGGACTCTTGATACTTGATGAGGGACACAATCCTAGAAGTACCACATCAAAGTTGAGGAAGTGCTTAATGGATCTACCAGCAGCATTGAGAATTTTACTTTCTGGCACTTTGTTTCAAAACAATTTTGGGGAATACTTCAACACTCTCTGTTTAGCCAGACCAAAATTTATTCACGAAGTTCTGGAAGAGTTAGATTCTAAGTACAGAAGAGGCAAACTAGAGGAGGAAGTGCCTCATTTACTAGAGGCACGCGCGAGAAAATTCTTCTTGGAGAACATTGAAAAGAAAATTAACTCAAATATTGATGCGGAAAAAATGAAGGGTATAGATGTGCTTCGAAAAATCACAAATGGTTTTATCGATGTTTATGACGGTGGAAGTTCTTCTGATACTCTTCCCGGTTTGCAAATCTATACATTGCTCGTGAATGCATCCGATGAACAACACGAGATTGTGCAGAAACTGCAAAAGAAAATGGTGGGCAGTACCGGTTACTCTCTTGAGGTTGAGCTTTTGATAACACTCGGGTCAATACATCCATGGTTGATCAAAACAGCAGAATCATGTGCAGCTAAGTTTTTCTCCGAAGAAGAGTTAGAAAGACTAGAACAAAACAAATTTGCTTTGAGAAAAGGTTCCAAAGTAAGATTTGTTTTGAGCCTAATCTCACGTGTGATGAGAAAGGAAAAGGTTCTCATCTTCTGTCACAACCTTGCACCAGTGAGGTTTTTGATAGAGTTATTTGAGAATCATTTTCGGTGGAAAAATGGTAAAGAGATTCTGCAACTAACTGGTGAACAAGACTTCTTTGAAAGAACGAACGTGATAGATAAATTTGAAGATCGTTGTGGCGATTCAAAGATACTTCTTGCTTCAATCAATGCTTGTGCTGAAGGTATCAGTTTAACAGCAGCTTCAAGAGTGATTTTTTTGGATTCTGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTTCGACCTGGTCAGGAGAAAATGGTTTATGTGTATCACTTGTTGATGACTGGATCCATGGAGGAAGATAAGTACAGAAGAACTACTTGGAAAGAGTGGGTTTCTTGTATGATTTTCAGTGAGGAGCTTGTTGAAGATCCTTCCAAATGGCAAGCTGAGAAAATTGAAGATGACATACTCAGAGAGATGGTTGAAGAGGACAAGTCCAAACTTATTCATATGATCATGAAGAATGAAAAGACTTCAACAAGCTAA 2091 0.3859 MTVMIYRQCTEGANGDEVLADTNKECKHDYRLDEQIGIYCRTCGFVKTEIRYISEPIVERLKWYEQKKQRSEDTEQVDEDVNNDTFSTDATDLGEPISKENDSVWELIPELKENMHAHQKKAFEFLWKNIAGSMEQSLMEEKSNTSGGCVISHAPGAGKTFLIISFLVSYLKLFPEKRPLVLAPKTTLYTWQKEFEKWNIPMPVYLIHSSQTQRHSMTPKSVVLPGVSNSNGVKHDFDCLQKIKSWNSHPSVLVMGYSSFLALMRTEDKKNSHRKRTAKALRESPGLLILDEGHNPRSTTSKLRKCLMDLPAALRILLSGTLFQNNFGEYFNTLCLARPKFIHEVLEELDSKYRRGKLEEEVPHLLEARARKFFLENIEKKINSNIDAEKMKGIDVLRKITNGFIDVYDGGSSSDTLPGLQIYTLLVNASDEQHEIVQKLQKKMVGSTGYSLEVELLITLGSIHPWLIKTAESCAAKFFSEEELERLEQNKFALRKGSKVRFVLSLISRVMRKEKVLIFCHNLAPVRFLIELFENHFRWKNGKEILQLTGEQDFFERTNVIDKFEDRCGDSKILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQEKMVYVYHLLMTGSMEEDKYRRTTWKEWVSCMIFSEELVEDPSKWQAEKIEDDILREMVEEDKSKLIHMIMKNEKTSTS* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2902 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 684 IPR027417 -
Mtr1g2902 696 Pfam SNF2-related domain 116 389 IPR000330 GO:0005524|GO:0140658
Mtr1g2902 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 355 IPR027417 -
Mtr1g2902 696 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 22 695 - -
Mtr1g2902 696 Gene3D - 418 696 IPR027417 -
Mtr1g2902 696 Gene3D - 84 381 IPR038718 -
Mtr1g2902 696 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 340 IPR014001 -
Mtr1g2902 696 Pfam Helicase conserved C-terminal domain 499 615 IPR001650 -
Mtr1g2902 696 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 22 695 IPR044567 GO:0080188
Mtr1g2902 696 SMART helicmild6 531 616 IPR001650 -
Mtr1g2902 696 MobiDBLite consensus disorder prediction 69 97 - -
Mtr1g2902 696 CDD SF2_C_SNF 498 627 - -
Mtr1g2902 696 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 502 668 IPR001650 -
Mtr1g2902 696 SMART ultradead3 111 352 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2902 Mtr-Chr1 40237292 40239933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2902 527 634 RAD5 or RAD16-like Gene Family AT5G05130 37.615 2.41e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr1g2902 SNF2_N 1.1e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2902 K10875 - gmx:100811703 916.376