Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2899 ATGAGTACATTTCTCTTCTTTTTGAAACAATATTATTCATTGATCATGATAAGCTTTAGAATAAAGAAACAAATTATTTTGATATACTTATGGTTGTGGTGGAGTACTACTACTAGTCTTTATGTTAATGCAACAAACGATAGTTTGAAGCCAGGTGATACATTTAATTCCAATTCCACGCTATGTTCTAAACAAGGCAAGTATTGTCTTGAATTGAGAAGATACTTGATTGTAATAGATGTTAATGGCACAGTAGTGTGGTTTTATGATAGAAATCATCCCTTTGACTCAGAAGAAGATTCAACAGTTTTATCACTAGATTACTCTGGTGTTCTCAAAATAGAATGTCAAGATAGGAAACCAATGATCATTTACACTTCACCTCAACCCAACAACAACACTGTGGCCACTATGTTAGACACGGGTAACTTTTTGCTTCAACAACTTTACCCAAATGGGACAAAGAGTATATTATGGCAGAGTTTTGATTATCCCACAAACTTTTTGATCCCAACGATGAAGTTGGGAGTTAATCGAAAAACAGGACATAATTGGTCATTGGTTTCATGGTTGACTCCTTTGCTACAAACGTCAGGTGAATTTAGTCTTGAATGGGAACCAAAACAAGGTGAATTGAACATCAAAAAACGCGGGAAAGTGTATTGGAAAAGTGGAAAACTTAAAAGCAATGGAATGTTCGAGAACATTCCAGTGAATGTTCAACATATGTATCAGTACATTATTGTTTCTAACAAGAATGAAGATTCTTTCGCTTTTGAAGTTAAAGATGGGAACAATGGAGGGTGCCAAAAATGGGAGGATATACCAACTTGTAGGGAACCTGGTGAGGTTTTTCAGAAAAAGGTGGGAACACCAAAAAGCAAAATGGACAATGCATCATCATATGAATGGAATGTAATTTATGGTTACAGTGATTGCAAGATGAGATGTTGGAGAAATTGTAGTTGCAATGGATTCGTAGAATTATATGATAATTTGACTGGATGTGTATTCTATTCATGGAATTCGACACAAGATGTTGATTTAGACAGTCAGGGTAACTTTAACGTCTTGGTAATGCCAACAAAATCAGCTCTACATAAGAAAAATAAAAGAAAGGAGGGTAAGAGCGAACATTTGGCGGATTCCAATGAATCATATGATATCAAAGATCTTGAAGATGACTTCAAGGGACATGATATAAAAGTTTTTAACTTCGCAACAATTTTAGAAGCAACTATGAATTTTTCCCCTGAAAACAAGTTAGGACAGGGAGGCTATGGACCCGTTTATAAGGGAATCTTGGCAACAGGACAAGAAGTTGCTATGAAAAGACTTTCAAAAACATCTGGACAAGGAATTGTGAAATTCAAAAATGAATTGGTACTTATATGTGAACTTCAGCACACCAATCTTGTACAACTACTTGGTTGTTGCATTCATGAAGAAGAAAGGATTCTAATTTATGAATATATGCCAAACAAAAGCCTGGATTTCTATCTATTTGATTGTACAAGAAGGAAGTTACTAGACTGGTAGAAGCGCTTCAACATAATTGAAGGAATTTCTCAAGGATTACTCTATCTTCACAAGTACTCAAGACTCAAAATCATTCATAGAGACTTGAAAGCAAGCAACATACTTTTGGATGAGAATATGAACCCAAAAATTTCTGATTTTGGTATGGCAAGAATGTTCACACAACAAGAATCAACGGTTAACACCAACAGGATTGTTGGGACGTATGGATACATGTCTCCAGAGTATGCTATGGAAGGAATCTGTTCGACAAAGTCTGATGTTTATAGTTTTGGAGCGTTGCTTCTTGAAATTGTTTGTGGAAAAAACAATAGCTTCTATGATGCTGATCGCCCACTAAATCTAATAGGACATGCATGGGAGCTATGGAATGATGGTGAGTATCTAAAGCTAATGGATCCAACATTAAATGACACATTTGCTCCTGGTGAAGTGTAAATGTGCATTCATGTTGGTCTCTTATGTGTAGAACAATATGCAAATGATCGACCAACAATGTCTGATGTTATATCAATGTTAACAAACAAACATGAACTCCCAACCTCACCGAGAAGGCCAGCAACACCTATTCTACAACAGCAGTTTCTACATCATGTGAAATTGAAGCAAAAATATAAGTAA 2160 0.3556 MSTFLFFLKQYYSLIMISFRIKKQIILIYLWLWWSTTTSLYVNATNDSLKPGDTFNSNSTLCSKQGKYCLELRRYLIVIDVNGTVVWFYDRNHPFDSEEDSTVLSLDYSGVLKIECQDRKPMIIYTSPQPNNNTVATMLDTGNFLLQQLYPNGTKSILWQSFDYPTNFLIPTMKLGVNRKTGHNWSLVSWLTPLLQTSGEFSLEWEPKQGELNIKKRGKVYWKSGKLKSNGMFENIPVNVQHMYQYIIVSNKNEDSFAFEVKDGNNGGCQKWEDIPTCREPGEVFQKKVGTPKSKMDNASSYEWNVIYGYSDCKMRCWRNCSCNGFVELYDNLTGCVFYSWNSTQDVDLDSQGNFNVLVMPTKSALHKKNKRKEGKSEHLADSNESYDIKDLEDDFKGHDIKVFNFATILEATMNFSPENKLGQGGYGPVYKGILATGQEVAMKRLSKTSGQGIVKFKNELVLICELQHTNLVQLLGCCIHEEERILIYEYMPNKSLDFYLFDCTRRKLLDW*KRFNIIEGISQGLLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGMARMFTQQESTVNTNRIVGTYGYMSPEYAMEGICSTKSDVYSFGALLLEIVCGKNNSFYDADRPLNLIGHAWELWNDGEYLKLMDPTLNDTFAPGEV*MCIHVGLLCVEQYANDRPTMSDVISMLTNKHELPTSPRRPATPILQQQFLHHVKLKQKYK* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2899 717 Pfam D-mannose binding lectin 84 190 IPR001480 -
Mtr1g2899 717 Gene3D Phosphorylase Kinase; domain 1 376 491 - -
Mtr1g2899 717 SMART serkin_6 416 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2899 717 PIRSF SRK 353 715 IPR024171 GO:0004674
Mtr1g2899 717 PIRSF SRK 260 365 IPR024171 GO:0004674
Mtr1g2899 717 PIRSF SRK 20 267 IPR024171 GO:0004674
Mtr1g2899 717 SUPERFAMILY Protein kinase-like (PK-like) 400 684 IPR011009 -
Mtr1g2899 717 Gene3D Transferase(Phosphotransferase) domain 1 492 694 - -
Mtr1g2899 717 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 226 IPR036426 -
Mtr1g2899 717 Gene3D - 40 162 IPR036426 -
Mtr1g2899 717 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 254 - -
Mtr1g2899 717 ProSiteProfiles Protein kinase domain profile. 416 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2899 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Mtr1g2899 717 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 363 704 - -
Mtr1g2899 717 ProSiteProfiles Bulb-type lectin domain profile. 46 159 IPR001480 -
Mtr1g2899 717 SMART blect_4 46 165 IPR001480 -
Mtr1g2899 717 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 23 254 - -
Mtr1g2899 717 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 363 704 - -
Mtr1g2899 717 Pfam Protein tyrosine and serine/threonine kinase 419 682 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2899 Mtr-Chr1 40178015 40182910 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2899 404 698 Receptor kinase-like Gene Family AT4G11530 57.860 2.87e-112 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr1g2899 PK_Tyr_Ser-Thr 3.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2899 - - mtr:MTR_1g081665 1261.51