Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2892 ATGGCATTCTCTCGCAACGGCGTCGTTATCCCCACCCACGATGAACACGCCGACATTGAGGAAGAAGACGACGACGATTTAGAGGAAGAGGACAACTATTTTGTCCAACCAAACACCGATCACCACTACCAAACAGAACAATCTCCATCAACCTTCGCCACCGCCGCTGTCCCTACCTCCGTCATCTTAGCCCTACCTCACGCCTCCGCATCAGCAACCACCATCGACGGCTCCCCTGAACCAAAACGGGAGCCAATGGAAGAGAAGACCAGCGATTCTCGGAAGCTTTTTCAGCGTATCTGGACTGAGGAAGACGAGATTACGATCCTGCAAGGGTTTCTCGATTACAACGCAAATCGTGAATCCTCTTATCATAACGATACTGGATCGTTCTATGATCACATGAAGGGGAAGATTCAGCTGGATTTCACCAAGAGCCAGCTTGTTGATAAGCTTCGGAGGCTGAAGAAGAAATATCGTACTGCTCTCCAGAAATTTGATTCTGGCAAGGATTTTGGTTTCAAAAGCACTCATGATCAAGCTGCTTTTGAAATTTCCCACAAAATCTGGAACATTAACGGTAATTCAACGCCAATTGGAGTACCTGTTGAGGAAGATGATGAAATCATCCCAAACCCTAACCCTAATTCTTCTCATTTGGCTGAGAAGAAAGCTGTGCAATCTCGTAAGAGATCGCGGGCAGCTGAGGAGGAGAGGCATGAGCTGAATGATTCGAAAGACAATCATCAGAATAACTCTGGTAATACCAATAGCAGCAATGTCGATGAAAATCGTGAAAAAAGTAACGGTAATCATGTGCATAATGTACCTGGATTGATTGAAGAGACCGTGAAGAGCTGTTTGACACCGGTTTTGAAGGAGTTATCCAATGCTACCATGAGTGGGAGTCCTTTTGGTTTTGGGGGAAGAGGGTTTGGAGCTGGAGGCTTTTCAATGAATACTGTGCCATTAGGGTTTTTGAATTTGGGGAGCGGAGAAAAGGCTGTGGATGATAAGTGGAGGAAGCAGCAGATTTTGGAGCTGGAGGTGTATTCCAAGCGGTTGGAGCTGGTGCAGGATGAAGTCAAGGCTGCGATCGAGGAGTTGCGATCGAATGCTGGAGCTGGAGGAGCCGGAGGTAGTGGAAATAATACCAATCAATAG 1164 0.4682 MAFSRNGVVIPTHDEHADIEEEDDDDLEEEDNYFVQPNTDHHYQTEQSPSTFATAAVPTSVILALPHASASATTIDGSPEPKREPMEEKTSDSRKLFQRIWTEEDEITILQGFLDYNANRESSYHNDTGSFYDHMKGKIQLDFTKSQLVDKLRRLKKKYRTALQKFDSGKDFGFKSTHDQAAFEISHKIWNINGNSTPIGVPVEEDDEIIPNPNPNSSHLAEKKAVQSRKRSRAAEEERHELNDSKDNHQNNSGNTNSSNVDENREKSNGNHVHNVPGLIEETVKSCLTPVLKELSNATMSGSPFGFGGRGFGAGGFSMNTVPLGFLNLGSGEKAVDDKWRKQQILELEVYSKRLELVQDEVKAAIEELRSNAGAGGAGGSGNNTNQ* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2892 387 Coils Coil 232 252 - -
Mtr1g2892 387 Pfam Protein of unknown function, DUF573 97 191 IPR007592 GO:0006355
Mtr1g2892 387 Coils Coil 348 372 - -
Mtr1g2892 387 MobiDBLite consensus disorder prediction 248 264 - -
Mtr1g2892 387 MobiDBLite consensus disorder prediction 223 247 - -
Mtr1g2892 387 MobiDBLite consensus disorder prediction 201 278 - -
Mtr1g2892 387 Coils Coil 145 165 - -
Mtr1g2892 387 MobiDBLite consensus disorder prediction 69 91 - -
Mtr1g2892 387 MobiDBLite consensus disorder prediction 1 29 - -
Mtr1g2892 387 PANTHER BNAANNG10740D PROTEIN 1 372 - -
Mtr1g2892 387 PANTHER BNAANNG10740D PROTEIN-RELATED 1 372 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2892 Mtr-Chr1 40123962 40125495 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2892 43 376 GeBP Transcription Factor Family AT5G28040 41.755 3.13e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Mtr1g2892 DUF573 5e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2892 - - cam:101492301 394.045