Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2887 ATGGCAGACAAGGCAGTGACAATCAGAACCAGGAAATTCATGACAAACAGGCTTCTCTCCAGGAAGCAATTTGTTATTGATGTTCTTCATCCAGGGAGGGCAAATGTATCCAAGGCTGAGCTAAAGGAGAAGCTTGCAAGGATTTACGATGTGAAGGACCCAAACACTGTTTTTGTGTTCAAGTTCAGAACTCATTTTGGAGGTGGCAAGTCCACTGGTTTTGGTTTGATCTATGATTCTGTTGAGAATGCAAAGAAATACGAGCCAAAATATAGACTTGTTAGGAATGGACTTGATACTAAGGTTGAAAAGTCAAGGAAGCAAATGAAGGAAAGAAAGAACCGGGCAAAGAAGATCCGTGGAGTAAAGAAGACCAAGGCTGGAGATGCTGCCAAGGCTGGCAAGAAGAAATAA 414 0.4227 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAAKAGKKK* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2887 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Mtr1g2887 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 IPR001976 GO:0003735|GO:0005840|GO:0006412
Mtr1g2887 137 MobiDBLite consensus disorder prediction 101 137 - -
Mtr1g2887 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 - -
Mtr1g2887 137 Pfam Ribosomal protein S24e 25 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Mtr1g2887 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Mtr1g2887 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Mtr1g2887 137 Coils Coil 135 137 - -
Mtr1g2887 137 Gene3D - 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2887 Mtr-Chr1 40089002 40091333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2887 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 87.121 7.22e-85 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2887 K02974 - gmx:100499852 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2887 1 40089002 40091333 Mtr1g2887 1 40089002 40091333 ECH
Mtr7g3742 7 54367980 54373419 Mtr1g2887 1 40089002 40091333 PCT