Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2879 ATGTATGATGGAGTCCCTGACCAATTCCACCAATTCATAACTCCAAGAACTTCTTCATCATCACTACCTCTTCACTTACCTTTCCCTCTTTCAACACCAAACAATACCTTCCCTCCTTTTGATCCTTATAATCAACAAAACCATCCTTCTCAACATCACCAATTGCCACTCCAAGTTCAACCTAATCTCTTGCACCCTTTACACCCTCACAAAGATGATGAAGATAAGGAACAAAACTCTACACCTTCAATGAACAACTTCCAAATTGACAGAGATCAAAGACAAATACTTCCTCAACTCATTGATCCTTGGACTAATGATGAAGTTCTTGCACTTTTGAAGATCAGATCCAGCATGGAGAGTTGGTTCCCAGATTTCACTTGGGAACATGTCTCAAGGAAGCTAGCAGAGGTTGGTTATAAACGTAGTGCTGAAAAATGCAAGGAAAAATTTGAAGAAGAAAGCAGATTTTTCAACAACATTAATCATAATCAAAATAGTTTTGGTAAGAATTTTAGGTTTGTTACTGAGCTGGAAGAGGTTTATCAAGGTGGTGGGGGTGAGAATAACAAAAATCTAGTTGAGGCTGAAAAGCAAAACGAGGTGCAAGACAAAATGGACCCTCATGAAGAGGATTCAAGAATGGATGATGTATTGGTGTCAAAGAAAAGTGAAGAAGAGGTAGTTGAGAAAGGTACTACAAATGATGAGAAGAAGAGGAAAAGATCAGGTGATGATAGATTTGAAGTGTTTAAGGGTTTTTGTGAGAGTGTTGTAAAGAAAATGATGGATCAACAAGAAGAAATGCACAACAAGCTTATTGAAGATATGGTTAAAAGAGATGAAGAGAAGTTTAGTAGAGAAGAAGCTTGGAAGAAACAAGAGATGGAGAAAATGAACAAAGAGCTTGAGTTGATGGCACATGAACAAGCTATTGCTGGTGATAGACAAGCACATATAATTCAATTCTTGAACAAATTCTCGACAAGTGCTAATTCTTCATCCCTAACTTCAATGTCAACTCAACTTCAAGCTTATTTAGCAACATTAACTTCAAACTCTTCTTCTTCAACATTGCACTCACAAAACCCTAATCCTGAAACTCTTAAAAAAACTCTTCAACCAATACCTGAAAACCCTAGCTCAACCCTTCCTTCTTCTTCTACTACTTTGGTGGCTCAACCTCGCAACAACAATCCTATTTCTTCATATAGCCTTATATCGAGCGGCGAGAGAGACGATATTGGTAGAAGATGGCCAAAAGATGAAGTGTTGGCATTGATAAACTTGAGGTGCAACAACAACAATGAAGAAAAGGAAGGAAACAGCAATAACAAGGCACCACTTTGGGAGAGAATTTCACAAGGAATGTTGGAGTTAGGATACAAGAGAAGTGCAAAGAGATGCAAAGAGAAGTGGGAGAATATCAACAAGTATTTCAGAAAAACAAAGGATGCTAATAGGAAAAGATCACTTGATTCAAGAACTTGTCCTTACTTTCATCTATTGACCAATCTTTATAACCAAGGTAAACTTGTTCTTCAATCTGATCAAAAGCAAGAAAGCAATAACGTGAATGTGCCTGAAGAAAATGTTGTTCAAGAGAAAGCAAAACAAGATGAAAACCAAGATGGTGCAGGTGAGTCTTCTCAAGTGGGGCCTCCAAGCTGGTAA 1674 0.3775 MYDGVPDQFHQFITPRTSSSSLPLHLPFPLSTPNNTFPPFDPYNQQNHPSQHHQLPLQVQPNLLHPLHPHKDDEDKEQNSTPSMNNFQIDRDQRQILPQLIDPWTNDEVLALLKIRSSMESWFPDFTWEHVSRKLAEVGYKRSAEKCKEKFEEESRFFNNINHNQNSFGKNFRFVTELEEVYQGGGGENNKNLVEAEKQNEVQDKMDPHEEDSRMDDVLVSKKSEEEVVEKGTTNDEKKRKRSGDDRFEVFKGFCESVVKKMMDQQEEMHNKLIEDMVKRDEEKFSREEAWKKQEMEKMNKELELMAHEQAIAGDRQAHIIQFLNKFSTSANSSSLTSMSTQLQAYLATLTSNSSSSTLHSQNPNPETLKKTLQPIPENPSSTLPSSSTTLVAQPRNNNPISSYSLISSGERDDIGRRWPKDEVLALINLRCNNNNEEKEGNSNNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANRKRSLDSRTCPYFHLLTNLYNQGKLVLQSDQKQESNNVNVPEENVVQEKAKQDENQDGAGESSQVGPPSW* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2879 557 CDD GT1 417 484 - -
Mtr1g2879 557 ProSiteProfiles Myb-like domain profile. 418 477 IPR001005 -
Mtr1g2879 557 PANTHER - 17 553 - -
Mtr1g2879 557 MobiDBLite consensus disorder prediction 33 52 - -
Mtr1g2879 557 MobiDBLite consensus disorder prediction 517 557 - -
Mtr1g2879 557 Gene3D - 419 482 - -
Mtr1g2879 557 Gene3D - 104 159 - -
Mtr1g2879 557 MobiDBLite consensus disorder prediction 222 243 - -
Mtr1g2879 557 MobiDBLite consensus disorder prediction 63 91 - -
Mtr1g2879 557 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 17 553 - -
Mtr1g2879 557 SMART sant 415 479 IPR001005 -
Mtr1g2879 557 SMART sant 100 157 IPR001005 -
Mtr1g2879 557 Pfam Myb/SANT-like DNA-binding domain 102 180 IPR044822 -
Mtr1g2879 557 Pfam Myb/SANT-like DNA-binding domain 417 504 IPR044822 -
Mtr1g2879 557 MobiDBLite consensus disorder prediction 354 398 - -
Mtr1g2879 557 ProSiteProfiles Myb-like domain profile. 103 155 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2879 Mtr-Chr1 39994399 39996909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2879 1 509 Trihelix Transcription Factor Family AT5G28300 41.017 2.18e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Mtr1g2879 Myb_DNA-bind_4 1.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2879 - - ccaj:109795059 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2879 1 39994399 39996909 Mtr1g2879 1 39994399 39996909 ECH
Mtr7g3753 7 54454913 54456958 Mtr1g2879 1 39994399 39996909 PCT