Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2878 ATGGAGCAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCAGCTCTTCTTGTGAGACATAAACATGAGAAGAAAAAATATGTGTTGAAGAAGATTAGACTTGCCCGCCAAACAGAGCGGTCTCGTAGATCTGCACACCAGGAGATGGAGCTTATCTCTAAATTACGAAACCCATTCATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATAATTATAGGTTACTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAGACTAATGGTGTTCTGTTTCCCGAGGAGAAACTTTGCAAGTGGCTTGTTCAACTTCTTATGGCACTTGACTACTTGCACATGAATCATATTCTTCATCGCGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGATCGTGACATACGACTGGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTTACTTCCTCTGTTGTCGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATACGAAATGGCAGGACATAAGCCTGCATTCAAAGCATTTGATATACAAGCATTGATTATCAAGATTAGCAAGTCCATAGTGGCTCCACTACCAACAAAATATTCTAGTTCATTTCGAAGTCTGGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTGAGACCCAGTGCTTCTGAGCTTCTTGGGCACCCACATCTTCAACCTTATGTTCTAAAGATCCATCTCAAACTCAATAGCCCCAGGCGAAATACATTGCCTGCTCATTGGCAAGAGTCAAAGTACACGAAGAAAACTAGATTTTTAGTTCCAGAAGACACTGTTAGGGATAAGCGCTATTCTTACAGTAACGACCGCACTCTAAATCCTAGCGTATCTGGAGCTGATCAAGATTCTGTATGCTCTACCCTAGAAATAGGTTGTACTCCTGATCACTTGAATCAAAGGTTAGCAGAATTATGTACAGGTGATAGCCGTGACATGAAGTTGGTCCATAAACCTGTTGTTTCCAGAACTTCTAGTATTGCTAAGGCTCCAAAGTTCACTTCATCAAAAGTTTCTGGCACCAACAGAAAATCAATGGAATCCTCAAACAATCGAAAGCTTCCTGTTTCACACAGCATCACAAAATCTGCTCATACAAATCGCAGAGCATCGTTTCCTTTGCCAACAAGGGGTGGTATTCGGGAGCCTCCTTCCAGGAAGAGTGTTGGTTTGCTTAGCCATGTGTCTTCACCGGATATCTCAGTTAACTCTCCCCGTATTGATAGGATAGCTGAATTCCCATTATCATCATATGACGATTGTTTGTTCCCTGTCAATAAGATGTCAACCTCTGCACAAGGTTCCTCAGGTTTCCCATCTCATTCAACTGTGATAGACAAATGCACAATAGAGGTATGTGATAGAGCCTCTGTTAAGCCTAGTTCTACGGATGATTGGCAGGGAATCAAGCGCAGCATGTTAAAGGAGATTCATGAGGATAAAAGTGGTTCCTCTGATCAAAATGCAACGGCAGGTGCATCAAGCTACACATCTTCGGACTTGCAGCGCCGACAGTTTGACACTTCATCTTTCCAACAAAGGGCTGAAGCCTTAGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTCCAGCAAGCAAGGTATGATGAACTCGGAGTTTTGTTGAAACCATTTGGTCCCGAGAAGGTTTCTCCAAGAGAAACTGCTATCTGGTTGAGCAAGAGCTTCAAAGGGAACACTAACAACACAGAAGAATCCCCGTAA 1839 0.4236 MEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKTNGVLFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAGHKPAFKAFDIQALIIKISKSIVAPLPTKYSSSFRSLVKSMLRKNPELRPSASELLGHPHLQPYVLKIHLKLNSPRRNTLPAHWQESKYTKKTRFLVPEDTVRDKRYSYSNDRTLNPSVSGADQDSVCSTLEIGCTPDHLNQRLAELCTGDSRDMKLVHKPVVSRTSSIAKAPKFTSSKVSGTNRKSMESSNNRKLPVSHSITKSAHTNRRASFPLPTRGGIREPPSRKSVGLLSHVSSPDISVNSPRIDRIAEFPLSSYDDCLFPVNKMSTSAQGSSGFPSHSTVIDKCTIEVCDRASVKPSSTDDWQGIKRSMLKEIHEDKSGSSDQNATAGASSYTSSDLQRRQFDTSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPEKVSPRETAIWLSKSFKGNTNNTEESP* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2878 612 MobiDBLite consensus disorder prediction 523 546 - -
Mtr1g2878 612 CDD STKc_Nek 3 258 - -
Mtr1g2878 612 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Mtr1g2878 612 MobiDBLite consensus disorder prediction 372 428 - -
Mtr1g2878 612 MobiDBLite consensus disorder prediction 372 409 - -
Mtr1g2878 612 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2878 612 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 597 - -
Mtr1g2878 612 PANTHER SERINE/THREONINE-KINASE NEK4 1 597 - -
Mtr1g2878 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Mtr1g2878 612 MobiDBLite consensus disorder prediction 517 546 - -
Mtr1g2878 612 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2878 612 Gene3D Transferase(Phosphotransferase) domain 1 86 314 - -
Mtr1g2878 612 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2878 612 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Mtr1g2878 612 SUPERFAMILY Protein kinase-like (PK-like) 1 298 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2878 Mtr-Chr1 39949300 39955483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2878 10 259 MAP Kinase Kinase Kinase AT1G53570 32.941 1.11e-38 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Mtr1g2878 Pkinase 1.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2878 K08857 - gmx:100804898 1045.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2878 1 39949300 39955483 Mtr1g2878 1 39949300 39955483 ECH