Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2872 ATGGCTGGTAATTGTTCAGAAGGATTAGGTGATGATTTCTTTGAGCAGATCTTAGCAGTGCCTGAGAACGGAGTTGGATATGGAGGAGTGTTGCAATTAGGGTCCACACCTCATGGTGGTTCTTTGAGAGGAGGAGGAGGAGGAATAATGCCATTAGGGTTGAATTTGGAGCAAAATCATCATGGGTTTCTCAGGCAGCATCAAGATGGAACACGGTTTGTTGATAACGTTGTTGATGTTGAAGGAAATATTACCAATAACAACAACAACAACCATCATCATCTTCGTCTACATGATATCAATAATCATAACAACAACAACAATATCACTTCTTCTTCACCTTCTTCTACCCCGGGAATCACTGATAGGGATTCGATGCAGATGAGGGGTTTGTTTTCAACGTTTGGACAATTGCATACTCCTACTCATGCTCAACCTGTACGCCCCATGCTCCAATCTCCACCTCCTCAACCCCAACTCCACCTTCACCATCAACACCAACAGCACTTTCAGAGCCAGCAACCAAATCCAGCGTCAGTTACTGCCATGCCACAACCACCTGGCATCCGTCCTCGAGTGCGAGCAAGAAGAGGCCAAGCCACAGACCCCCACAGCATTGCTGAGCGGCTGCGTCGTGAAAGAATCGCTGAAAGAATGAAGGCATTACAGGAATTAGTTCCCAGCATCAACAAGACTGACAAAGCGGCGATGCTTGATGAAATTGTTGATTATGTGAAGTTCCTTAGGCTCCAAGTTAAGGTCTTGAGCATGAGTAGACTTGGTGGAGCTGGTGCAGTTGCTCAGCTTGTAGCTGATGTTCCCGTTTCTGCAGTGGAGGGGGAGGACATAGAAGGTGGAACCAACCAGCAAGCCTGGGCGAAGTGGTCGAACGATGGAACAGAACAACAAGTTGCCAAACTTATGGAAGAAGATGTTGGTGCAGCTATGCAACTTCTTCAATCCAAGGCACTTTGCATAATGCCTATATCTCTAGCATCAGCAATTTTTCGTATGCCTCAATCAGACTCATCAACAATCATCAAGCCTGAATCAAACAACCACACATAG 1068 0.4597 MAGNCSEGLGDDFFEQILAVPENGVGYGGVLQLGSTPHGGSLRGGGGGIMPLGLNLEQNHHGFLRQHQDGTRFVDNVVDVEGNITNNNNNNHHHLRLHDINNHNNNNNITSSSPSSTPGITDRDSMQMRGLFSTFGQLHTPTHAQPVRPMLQSPPPQPQLHLHHQHQQHFQSQQPNPASVTAMPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPVSAVEGEDIEGGTNQQAWAKWSNDGTEQQVAKLMEEDVGAAMQLLQSKALCIMPISLASAIFRMPQSDSSTIIKPESNNHT* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2872 355 SMART finulus 205 254 IPR011598 GO:0046983
Mtr1g2872 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 258 IPR036638 GO:0046983
Mtr1g2872 355 MobiDBLite consensus disorder prediction 99 124 - -
Mtr1g2872 355 MobiDBLite consensus disorder prediction 101 124 - -
Mtr1g2872 355 MobiDBLite consensus disorder prediction 158 179 - -
Mtr1g2872 355 Pfam Helix-loop-helix DNA-binding domain 204 248 IPR011598 GO:0046983
Mtr1g2872 355 Gene3D - 194 256 IPR036638 GO:0046983
Mtr1g2872 355 MobiDBLite consensus disorder prediction 153 203 - -
Mtr1g2872 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983
Mtr1g2872 355 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 342 - -
Mtr1g2872 355 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2872 Mtr-Chr1 39881967 39889081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2872 173 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 76.374 2.15e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g2872 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2872 - - vun:114189791 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2462 1 35297367 35301586 Mtr1g2872 1 39881967 39889081 ECH
Mtr1g2872 1 39881967 39889081 Mtr1g2872 1 39881967 39889081 ECH