Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2871 ATGACTAACGTTGGGGATGCAGAGAGAGACAAGTACAGCTTGATAAATTTTGAGGAGACCGAGTTACGACTCGGTCTTCCAGGTGCAGGTGATCACGGAGAATCACCTGTTAAAAATAGTTGTGGAAAGAGAGGTTTCTCAGAAACTGCTAATGTTGATTTGAAGCTTAATCTTTCTCCTATAAATGATTCTGCTTCATCTTCTTCAACTATAGCTTCTGTAGCTGAAAACAAAGGCAAAGACACAACAACTTCTGCTACTGTTTCTCCTCCTCCTCGTGCTAAGGCACAAGTTGTGGGATGGCCACCAGTTAGATCCTTTAGAAAGAACATAGTAAATGTTCATCAAAAGAGCAATAGTGAAACAGAAGTAGATAAGAGCATAAGTGGTGGTGGTGGGAATGGAGCATTTGTTAAGGTGAGTATGGATGGTGCACCATATCTACGTAAGGTGGACCTTAAATTGTACAAGAGTTACCAAGAGCTGTCAGATGCGCTGGCTAAAATGTTTAGTTCCTTCACAATTGACAATTGTGGGTCCCAAGTTACCAAAGACTTCATGAATGAAAGCAAATTGATTGACCTTTTGAACGGTTCTGATTATGTACCAACATATGAAGACAAAGATGGTGATTGGATGCTTGTTGGTGATGTTCCTTGGGAAATGTTCGTTCAATCGTGCAAGCGTCTTCGCATAATGAAAGGTTCTGAGGCAATTGGGCTAGCGCCAAGGGCAGTGGAAAAATGCAAGAACAGAAGCTGA 762 0.416 MTNVGDAERDKYSLINFEETELRLGLPGAGDHGESPVKNSCGKRGFSETANVDLKLNLSPINDSASSSSTIASVAENKGKDTTTSATVSPPPRAKAQVVGWPPVRSFRKNIVNVHQKSNSETEVDKSISGGGGNGAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIDNCGSQVTKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQSCKRLRIMKGSEAIGLAPRAVEKCKNRS* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2871 253 ProSiteProfiles PB1 domain profile. 135 235 IPR000270 GO:0005515
Mtr1g2871 253 SUPERFAMILY CAD & PB1 domains 127 234 - -
Mtr1g2871 253 Pfam AUX/IAA family 19 244 IPR033389 -
Mtr1g2871 253 MobiDBLite consensus disorder prediction 63 98 - -
Mtr1g2871 253 Gene3D - 132 247 - -
Mtr1g2871 253 MobiDBLite consensus disorder prediction 63 91 - -
Mtr1g2871 253 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 246 IPR003311 GO:0005634|GO:0006355
Mtr1g2871 253 PANTHER AUXIN-INDUCED PROTEIN AUX28 12 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2871 Mtr-Chr1 39862450 39865869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2871 139 243 B3 DNA Binding Superfamily AT4G23980 33.333 3.19e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Mtr1g2871 AUX_IAA 8.2e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2871 K14484 - pvy:116127428 331.257