Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2860 ATGTCTCCCAACGCCGCCGCTCAGCCCAAGCCCAAGAAAACCGCTGCAGCAAAGAAGCCTCTCTCTCATCCTACTTACGCTGAGATGATAACTGAAGCAATTGTGAGTTTGAAAGAACGAACTGGTTCAAGCCAACACGCGATTACAAAATTCATCGAAGAGAAGCATAAGGATTTATCTCCAACATTCCGCAAACTCATTCTTCTTCATCTGAAGAAATCTGTGGCTTCTGGAAAGCTTGTGAAGGTGAAAAACTCCTTCAAAATCGCCCCAGCTGTGGCCAAAACTGCTCCGGTGAAGGCCGCTATTGCTCCTGCTAAGAAGGCTAAGGCTGTTACCAAGCCAGCCGCTAAGGCTGCAACTAAGCCAAAGGCGAAAGCTGCTGCTGTGAAGCCGAAAGCTGCCGCAAAGCCAAAAGCAGCGGCGAAGCCTAAGGCTGTTGTGAAGCCGAAAGCAAAGAGTGTGAAGGCTACGCCGGTGAAGAAAGCGGCGAAGAAGGTGGTTGCAAAGAAGCCGAAGAGTGTTAAGACTCCGGTGAAGAAAGCTAAGAAGTGA 555 0.4955 MSPNAAAQPKPKKTAAAKKPLSHPTYAEMITEAIVSLKERTGSSQHAITKFIEEKHKDLSPTFRKLILLHLKKSVASGKLVKVKNSFKIAPAVAKTAPVKAAIAPAKKAKAVTKPAAKAATKPKAKAAAVKPKAAAKPKAAAKPKAVVKPKAKSVKATPVKKAAKKVVAKKPKSVKTPVKKAKK* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2860 184 MobiDBLite consensus disorder prediction 114 184 - -
Mtr1g2860 184 Gene3D - 17 100 IPR036388 -
Mtr1g2860 184 PANTHER HISTONE H1 5 183 - -
Mtr1g2860 184 CDD H15 22 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr1g2860 184 SMART h15plus2 20 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr1g2860 184 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 5 183 - -
Mtr1g2860 184 MobiDBLite consensus disorder prediction 1 22 - -
Mtr1g2860 184 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 22 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr1g2860 184 PRINTS Histone H5 signature 9 30 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mtr1g2860 184 PRINTS Histone H5 signature 36 53 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mtr1g2860 184 PRINTS Histone H5 signature 118 132 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mtr1g2860 184 PRINTS Histone H5 signature 155 172 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mtr1g2860 184 PRINTS Histone H5 signature 177 184 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mtr1g2860 184 MobiDBLite consensus disorder prediction 144 184 - -
Mtr1g2860 184 SUPERFAMILY "Winged helix" DNA-binding domain 19 100 IPR036390 -
Mtr1g2860 184 Pfam linker histone H1 and H5 family 23 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2860 Mtr-Chr1 39777196 39778165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2860 24 89 Single Myb Histone (SMH) Gene Family AT1G72740 36.364 5.89e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2860 K11275 - gmx:100810590 126.716