Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2853 ATGGGGACTCCAGTGAATATTATTGTGGGTTCTCATGTCTGGATTGAAGATCCAGAGGAAGCTTGGATTGGCGGGTACGTATCAAAAATCAATGAAAAGGATGCTGAAGTTGAAACTACCGATGGAAAAAAGGTTGCAAATTTATCAAAAATACTTCCTAAGGATACGGAAGTTCTTCCTGGTGGAGTGGATGATATGACTAAACTGTCCTATTTGCACGAGCCTGGAGTCCTGCAGAACTTAAAAGCTAGATATGAATTGAATAAAATATATACTTATACTGGAAACATTCTGATCGCAATAAATCCATTCCAAACGCTGCCTCATATTTATGGTGCGCACATGATGCAACGATACAAGGAAGATCCACTTGGAGAACTAAGCCCTCATGTATTTGCAGTAGCTGAGGTTGCATATAGGGCAATGGTTACTGAATGGAAAAACAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGATTATGCAATTCCTAGCTTTCTTAGGTGGTAGAGCTGTGACTGAAGGAAGAACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGCAATGCCAAAACTGTCAGGAATAACAATTCCAGCCGTTTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGCGGAAGAATCTCAGGAGCAGCCATCCGAACATACCTTCTAGAGAGATCTCGGGTCTGTCAAATTAATGATCCTGAACGAAACTACCACTGCTTTTATCTTCTTTGCGCCGCACCACAGGAGGAAATTGAGAAATACAAATTAGGAAATCCTAAATCGTTTCACTACCTTAACCAGTCACAATGCTATGAACTGGCTGATGTAAATGATGCTCATGAGTATCTCGCCACCCGTAGAGCTATGGGTATTGTTGGAATAGGTCACAAAGATCAGGAAGCCATTTTCAGAATTGTTGCTGCAATTCTTCATCTTGGTAATATTGATTTTGCCAAAGGAAAGGAAACCGACTCATCCATTCCTAAAGATAGCAAAGCCGAATTCCACCTGAAAACGGCTGCTGAGCTTCTGATGTGTGATGCTGATGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACTCCCGAAGAAGTTATAAAACGGAGCCTTGACCCGGGAAGTGCAACAGTCAGTAGAGATGGACTGGCAAAAACAATTTATTCTCGGCTATTTGATTGGCTGGTGGACAAGATTAATAATTCAATTGGACAAGACCCCAATTCTAAATGTTTGATTGGGGTCCTTGATATCTATGGTTTCGAAAGCTTTAAATTGAACAGTTTTGAGCAGTTCTGCATTAATTTCACAAATGAAAAGTTGCAGCAACATTTCAATCAGCATATGTTCAAAATGGAACAAGAAGAATATGCAAAGGAGGAGATCAATTGGAGCTACATTGAATTTGTGGACAACAAAGATGTTTTGGACCTTATTGAAAAGAAATCCGGAGGAATCATTGCTCTCCTCGACGAAGCTTGCATGTTTCCAAAGTCAACACATGAAACATTTGCAAACAAGCTTTATCAAACATTTAAGAATAACAAGCGCTTTATTAAGCCAAAATTGTCTCAAACAGATTTCACCATTGCCCATTATGCTGGAGAGGTGACATACCAATCTGACCATTTTTTAGACAAAAACAAGGATTATGTGGTTCCTGAATATCAAGATTTATTGATTGCTTCCAAATGTCCTTTTGTATCTGCCCTTTTTCCACCACTTCCAGAAGAGACATCAAAATCTTCCAAATTTTCATCAATAGGTTCTCGTTTTAAGGAAGCTAATAAAATTTGGATGGTACAGCTACAGCTACAGCAGCTAATGGAAACATTAAGTTCAACAGAACCCCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTTGAGAATGTCAACATTATGCATCAACTTCGTTGTGGTGGTGTATTAGATGCTATCAGAATCAGTTGTGCTGGCTATCCTACACGCCGCCCTTTCTTTGAATTTGTGAACAGATTTGGTCTCCTTGCCCCAGAGGCCATAGAAGCAAACTGTAATGAAAAGAATGCTTGCCAAAAGATTCTGGAGAAGACGGGGCTTAAAGGATATCGGATTGGAAAAACAAAGGTATTCTTGAGAGCAGGTCAGATGGCTGAACTAGATGCTCAGAGAGCTCAAGTACTTGGTAATGCAACCAAAGTTATCCAACAGCACATACGAACCCATCAAGCTCGGAAACATTTTCTTGCATTGCAAAAGAAGACCATATATGTGCAGTCTTGGTGGAGAGGAAGACTCGCATTCAAACTCTATGAGAAAATGAGAAGGGAGGCCGCTGCTGTGAAAATTCAAAAGAACATACGCAGTTACGAAACTAGGAAGGCGTATAAAAAACTTCATATGTCAGTACTTACTTTGCAAACAGCTTTAAGGGCCATTGCTGCTTGCAAGGAATTCAGATTTAGGAAACAGACCAAAGCTTCCATCATTATTCAGGCTCAGTGGCGGTGCCACAAAGCGGTCTTACAATATAAGAGGCTCAAAAAAGGTTCAATAGTTACACAATGTAGATGGAGGGGGCGTTTAGCTAAGGGAGAACTTAGGAAACTGAAAATGGCTGCAAGAGATACTGGCGCACTTCGTGAAGCAAAGAGTATGCTTGAAAAAAAAGTGAAGGAACTTACTTGGCATCTCCAACTGGAAAAAGGTTTAAAGGCTGCAAGAGATACTGGCCCACTTAAAGAAGCAAAGGGTAAGCTTGAAAAACAAGTGGAGGAACTTAAATGGCGTCTCCAACTGGAAAAAGGTTTAAGGACAAATCTAGCAGAATTTAAAGCACAGGAGATAGCAAAACTGCAGAATTCATTGCAGGAGATGAAGAGAAAAGTTGATGAAACTAATGCTCTGCTCCTCTGGGAGCGAGAGAATGCAAAGAAAGCTATTGAAGTAGCATCTCCTGTCATTAAAGAAGCAATGGTTCTTGTTGAAGATAAAGAGAAGATTAAGAGACTGAGAATGGAAGTTGACAACCTAAAGACATCACTCAAGTTAGAGAAACTGAAATGCAACAGCTTTGAAAGAAAATATAACGAAGCTAAAATTTGCAGTGAAGAAAGAGGTAAAAGGTTAGAAGACACGGAGAAGAAGCTTCGTCAGCTCCAAGAATCAATGACCAGGTTTACTTCTCAAAAGAATTTCTAG 3246 0.3983 MGTPVNIIVGSHVWIEDPEEAWIGGYVSKINEKDAEVETTDGKKVANLSKILPKDTEVLPGGVDDMTKLSYLHEPGVLQNLKARYELNKIYTYTGNILIAINPFQTLPHIYGAHMMQRYKEDPLGELSPHVFAVAEVAYRAMVTEWKNNSILVSGESGAGKTETTKMIMQFLAFLGGRAVTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQEEIEKYKLGNPKSFHYLNQSQCYELADVNDAHEYLATRRAMGIVGIGHKDQEAIFRIVAAILHLGNIDFAKGKETDSSIPKDSKAEFHLKTAAELLMCDADALEDALCKRVMITPEEVIKRSLDPGSATVSRDGLAKTIYSRLFDWLVDKINNSIGQDPNSKCLIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHMFKMEQEEYAKEEINWSYIEFVDNKDVLDLIEKKSGGIIALLDEACMFPKSTHETFANKLYQTFKNNKRFIKPKLSQTDFTIAHYAGEVTYQSDHFLDKNKDYVVPEYQDLLIASKCPFVSALFPPLPEETSKSSKFSSIGSRFKEANKIWMVQLQLQQLMETLSSTEPHYIRCVKPNNLLKPAIFENVNIMHQLRCGGVLDAIRISCAGYPTRRPFFEFVNRFGLLAPEAIEANCNEKNACQKILEKTGLKGYRIGKTKVFLRAGQMAELDAQRAQVLGNATKVIQQHIRTHQARKHFLALQKKTIYVQSWWRGRLAFKLYEKMRREAAAVKIQKNIRSYETRKAYKKLHMSVLTLQTALRAIAACKEFRFRKQTKASIIIQAQWRCHKAVLQYKRLKKGSIVTQCRWRGRLAKGELRKLKMAARDTGALREAKSMLEKKVKELTWHLQLEKGLKAARDTGPLKEAKGKLEKQVEELKWRLQLEKGLRTNLAEFKAQEIAKLQNSLQEMKRKVDETNALLLWERENAKKAIEVASPVIKEAMVLVEDKEKIKRLRMEVDNLKTSLKLEKLKCNSFERKYNEAKICSEERGKRLEDTEKKLRQLQESMTRFTSQKNF* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2853 1081 Coils Coil 957 984 - -
Mtr1g2853 1081 Pfam Myosin head (motor domain) 63 728 IPR001609 GO:0003774|GO:0005524|GO:0016459
Mtr1g2853 1081 ProSiteProfiles IQ motif profile. 766 795 IPR000048 GO:0005515
Mtr1g2853 1081 Gene3D Kinesin motor domain 64 670 IPR036961 -
Mtr1g2853 1081 PANTHER MYOSIN-9 6 920 - -
Mtr1g2853 1081 PANTHER MYOSIN-9 921 1076 - -
Mtr1g2853 1081 ProSiteProfiles Myosin motor domain profile. 61 740 IPR001609 GO:0003774|GO:0005524|GO:0016459
Mtr1g2853 1081 SMART MYSc_2a 55 741 IPR001609 GO:0003774|GO:0005524|GO:0016459
Mtr1g2853 1081 ProSiteProfiles IQ motif profile. 791 820 IPR000048 GO:0005515
Mtr1g2853 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 793 890 IPR027417 -
Mtr1g2853 1081 Pfam IQ calmodulin-binding motif 768 786 IPR000048 GO:0005515
Mtr1g2853 1081 Pfam IQ calmodulin-binding motif 793 812 IPR000048 GO:0005515
Mtr1g2853 1081 Pfam IQ calmodulin-binding motif 746 763 IPR000048 GO:0005515
Mtr1g2853 1081 Pfam IQ calmodulin-binding motif 840 860 IPR000048 GO:0005515
Mtr1g2853 1081 Gene3D Myosin VI head, motor domain, U50 subdomain 311 600 - -
Mtr1g2853 1081 CDD MYSc_Myo11 75 728 IPR036018 -
Mtr1g2853 1081 Gene3D - 675 738 - -
Mtr1g2853 1081 ProSiteProfiles IQ motif profile. 862 891 IPR000048 GO:0005515
Mtr1g2853 1081 Coils Coil 1009 1036 - -
Mtr1g2853 1081 Pfam Myosin N-terminal SH3-like domain 9 45 IPR004009 GO:0003774|GO:0005524|GO:0016459
Mtr1g2853 1081 PANTHER MYOSIN 921 1076 - -
Mtr1g2853 1081 PANTHER MYOSIN 6 920 - -
Mtr1g2853 1081 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 56 IPR004009 GO:0003774|GO:0005524|GO:0016459
Mtr1g2853 1081 Gene3D - 438 631 - -
Mtr1g2853 1081 Gene3D - 743 792 - -
Mtr1g2853 1081 Gene3D - 793 840 - -
Mtr1g2853 1081 Gene3D - 841 890 - -
Mtr1g2853 1081 PRINTS Myosin heavy chain signature 91 110 IPR001609 GO:0003774|GO:0005524|GO:0016459
Mtr1g2853 1081 PRINTS Myosin heavy chain signature 148 173 IPR001609 GO:0003774|GO:0005524|GO:0016459
Mtr1g2853 1081 PRINTS Myosin heavy chain signature 195 222 IPR001609 GO:0003774|GO:0005524|GO:0016459
Mtr1g2853 1081 PRINTS Myosin heavy chain signature 428 456 IPR001609 GO:0003774|GO:0005524|GO:0016459
Mtr1g2853 1081 PRINTS Myosin heavy chain signature 481 509 IPR001609 GO:0003774|GO:0005524|GO:0016459
Mtr1g2853 1081 Coils Coil 1051 1078 - -
Mtr1g2853 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 793 IPR027417 -
Mtr1g2853 1081 Gene3D - 251 309 - -
Mtr1g2853 1081 ProSiteProfiles IQ motif profile. 839 866 IPR000048 GO:0005515
Mtr1g2853 1081 SMART iq_5 861 883 IPR000048 GO:0005515
Mtr1g2853 1081 SMART iq_5 813 835 IPR000048 GO:0005515
Mtr1g2853 1081 SMART iq_5 790 812 IPR000048 GO:0005515
Mtr1g2853 1081 SMART iq_5 838 860 IPR000048 GO:0005515
Mtr1g2853 1081 SMART iq_5 742 764 IPR000048 GO:0005515
Mtr1g2853 1081 SMART iq_5 765 787 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2853 Mtr-Chr1 39703730 39722467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2853 1 1080 Myosins gene family AT1G54560 73.451 0.0 1644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2853 K10357 - gmx:100816792 1732.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2853 1 39703730 39722467 Mtr1g2853 1 39703730 39722467 ECH