Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2848 ATGAAGCAAGCAGGAAGAGAAGTCCAAAAACGGTCACGGTGGCTGCTGATACCGTTTTGTAACGGCCGCAATCCCGTAATTTTACCAGATATGGAGGGAATACCTGAGGATGAAGTGGTAAATATTGAGAGTGCTTCTGGTGGTTCTGCAAATGACGACTCAGACGATGAGGGATCTTCGCCTTCTGATATTGATGACAAATTGCATCTTGAGGAACCTCTATCGGAGGCGGAAATAGAAGACCTTATTTCTGAGCTGTTAGAAGTGGAGAGTAAGGCTGCGGAGGCCCAAGAAACTCTTGAAGAAGAGTCTCTTGCCAAAGTGGAAAGTGAAGTTAGACAAGAATTGGAGCAAACTCTACAGGGGGATGATCTGGAAACTGCTGTTGCTGATGAGATGGCTGCTTTTAAAGAAGAGTGGGAAGCTGCTCTGGATGACCTTGAAACTGAAAGTTCCCACTTACTGGAACAACTTGACGGGGCTGGAATTGAGCTCCCAAGCCTTTATAAGTTGATTGAAAGAGAAGCTCCAGATCGTTGTTGCACTGAAGCATGGAAAAAGCGGAATCATTGGGTTGGGTCTCAGGCAACTACTGAAATTGCTTCGTCAGTTTCTGATGCTGAAAAGTATCTACAAATAAACAGACCTGTTAGAAGGCGACATGGCAAATTATTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAAATTTCTCCTGAAACCCTGGAACCTGGAAAAAAAGAAACTGAGGGGGACTGGGATGTGTTCAATAAAATAATTTCTGATGAGAGTGGTATTGATGCCTCATTTGGCAGTAAGACTTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATAGGACTCGAATTTCCTGGAGTCAACGAGGTGGAAGAAATTGATGATATTGATGGCAATTCTACCGATCCGTTTGTTGCAGCAGCCATTGCTAATGAAAAAGAATTAGATCTTTCTGAGGAGCAAAGAAGACAATTTAAAAAGGTCAAAGAAGAGGATGATGCAATTGTTGATAGGAAGCTTCAAGTACGTTTGAAACACAGAAGACATCGAAAAAAAAGTAAACAGCGAGAAACAAGTACACCTATCCTGTCGATGGAGAGCCATGCACAGAAGTCTTCATCTGTTGATCAATTTAACCCTGATACAAAGGAAGGAACTAGCGATGAAGGGGAAATTCTGTCTGACAATAACAAGGCTGCAGGTTTGAATATGGAGGCCACTAAGATTAAAGGTTTTGATGCCAATTTTCATCTTGACAACGAAAAGCCTATGGGAGATGGTAATTTGCAAGATCCTCCAAAATATCCTTTGGGTGATGATATTGAACAGAGAGGAACCAAGCGTCTAAATGACGGTGAGCTTGATGCTGATAAAAAGAAGGGGCGGGCTGATATCATGAACAGTGACGATGATATACCCGTTTCCAGTTCTGGTAGTAGTGATTCAGATGATTCAGACGACTCAGACGATTCAGACGATTCAGATGATTCAGAGACAAATGTTTCAATAAGCACTAAACGAAGACGCAAAAAGAAGATTAGGAGGATACTTGATGACACTGAATTGGGAGAAGAAACAAAAAAGAAAATAGCAATTGAAAAGGAACGTCAAGAACGCCTGAAGTCTTTGAGAGTACAGTTTTCTGCTTCATCGTTCGACACTAGCTCTGCTGGCTGTAATGGGAGTTCATCCGAAGGTGCAAGCATTGAAATTCTTGGTGATGCACTGGCAGGTTATATAGTGAATGTTGTGAGAGAAAAAGGTGAAGAAGCGGTTAGAATACCTCCGAGCATTTCAGCAAAGCTGAAGGCCCATCAGATTGCCGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTTAAGTCTGGAGATAAAGGTCTAGGGTGTATTCTAGCACATACCATGGGCCTGGGTAAAACATTTCAGGTAATAGCTTTCTTGTATACGGCAATGAGAAGTGTTGATTTGGGTTTAAGAACTGCACTTATAGTCACACCTGTAAATGTGCTACATAATTGGAGGACGGAGTTCATCAAATGGGCACCATCAGAATTAAAGCGACTAAAGGTCTTCATGCTGGAAGATGTATCAAGAGATAGGAGGGCACAATTGCTCGCCAAATGGAGAGCGAAAGGTGGTGTATTGTTAATCGGCTATGCTGCTTTCCGGAATTTGTCTTTTGGAAAGCACGTGAAAGACCGGGAGATGGCCAGAGAACTTTGCCATGCTTTGCAGGATGGCCCTGACATTCTTGTGTGTGATGAAGCCCATATCATTAAAAATACTAAGGCTGACGTTACTCATGCCTTGAAACAAGTAAAGTGCCAGAGAAGAATTGCACTTACAGGATCACCTCTTCAAAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTACGAGAAGGTTTTCTTGGAAGCAGTCATGAGTTTAGGAACCGCTTCCAAAATCCTATAGAGAATGGTCAACACACTAATTCCACTCAGACTGATGTAAAAATTATGAACCAAAGGTCTCACATCCTCTATGAACAATTAAAAGGCTTTGTCCAAAGAATGGACATGAATGTTGTGAAGAAGGACCTACCGCCCAAAACTGTTTTCGTGATAACAGTCAAGCTTTCTCCCCTACAAAGAAAATTGTACAAGAGATTCATTGACGTGCATGGGTTCTCTAATGTTAAGGAAAATCAGGAAAATTTAAGAAAGAGGAGTTTTTTTGCTGGGTATCAGGCATTGGCTCGGATATGGAACCACCCTGGGATTTTGCAAATGGCAAAAGAAGACAAGGAATGTGTTAGACCTGAAGATGTTGTTGAGAATTTACTTGTTGATGATATCTCAAGTGATGATTCCGATTCTAATGTGCTTGCTGGAGAGAAGTTGAAGTATACAAATGATTTGCCACCAAGGAAGGATGGTAATGGATTTTTCATAAAGGGCTGGTGGAAAGATATTCTTCAGGGCAAAATTTTTAAAGAGATTGATCAAAGTGGCAAAATGGTTTTACTAATTGATATACTCACCATGAGTTCTGACGTGGGTGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATAGAACTATATCTCTCAAAGCTACCACGAAGTGGAAAGCGAGGGAAGCTGTGGAAGAAGGGAAGAGATTGGTATAGGCTGGATGGAAGGACAGAGAGCTCGGAAAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTCTGAATAAAAGGGTTAAATGCACACTTATTTCAACCCGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTTCAGGCTATCTATCGAGCTTGGAGGTATGGGCAGAAAAAGCCCGTGTTTGCTTATCGGTTGCTGGCTCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTTACGAAAGAGGGGCTTGCTGCTAGAGTGGTCGATAGACAACAGGTGCATAGGACCATATCTAAAGAAGAAATGCTGCATCTCTTTGAATTTGGTGAAGACGAGAATCCTGAGACTTTGGCTGAACTAAGTGAACAAAGTAATCCGATTTTGGCTGGGGATTCACTGAAACATACAGTACCACATTCAAATGGAAGCAGTTATTCTGATAAGTTAATGGAAAGCTTACTAGGCAAGCATCATCCCCGGTGGATTGCCAATTATCATTTACATGAATCCCTGTTACAAGAAAACGAAGAGGAAAAACTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTGTATCGCAAATCGCTGGAATGGGAAGAAGTTCAGAGAGTACCGATTGGTGAGTCTGTGCCTGATCCAAAGCCAGAAGTGTCAAAGGCAGAAGAAGAACAACCTGAAGTAGAAACTTGGCAGCTTTCAACTAAGCTGAGAAATCGTTTCACAAAGCGGCAATGCACCAACCTTGCACATTTGCTGACACTTAGAAGCCAGAGAATAAAAATTGGGGGCTATACAGTCTGCGGGGAATGTGCCCGGGTGGTAAGGTGGGAAGACTTGAAGAAATAA 4107 0.4193 MKQAGREVQKRSRWLLIPFCNGRNPVILPDMEGIPEDEVVNIESASGGSANDDSDDEGSSPSDIDDKLHLEEPLSEAEIEDLISELLEVESKAAEAQETLEEESLAKVESEVRQELEQTLQGDDLETAVADEMAAFKEEWEAALDDLETESSHLLEQLDGAGIELPSLYKLIEREAPDRCCTEAWKKRNHWVGSQATTEIASSVSDAEKYLQINRPVRRRHGKLLEEGASGFLQKKISPETLEPGKKETEGDWDVFNKIISDESGIDASFGSKTWASVYLASTPQQAALIGLEFPGVNEVEEIDDIDGNSTDPFVAAAIANEKELDLSEEQRRQFKKVKEEDDAIVDRKLQVRLKHRRHRKKSKQRETSTPILSMESHAQKSSSVDQFNPDTKEGTSDEGEILSDNNKAAGLNMEATKIKGFDANFHLDNEKPMGDGNLQDPPKYPLGDDIEQRGTKRLNDGELDADKKKGRADIMNSDDDIPVSSSGSSDSDDSDDSDDSDDSDDSETNVSISTKRRRKKKIRRILDDTELGEETKKKIAIEKERQERLKSLRVQFSASSFDTSSAGCNGSSSEGASIEILGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHNWRTEFIKWAPSELKRLKVFMLEDVSRDRRAQLLAKWRAKGGVLLIGYAAFRNLSFGKHVKDREMARELCHALQDGPDILVCDEAHIIKNTKADVTHALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTQTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFIDVHGFSNVKENQENLRKRSFFAGYQALARIWNHPGILQMAKEDKECVRPEDVVENLLVDDISSDDSDSNVLAGEKLKYTNDLPPRKDGNGFFIKGWWKDILQGKIFKEIDQSGKMVLLIDILTMSSDVGDKVLVFSQSIPTLDLIELYLSKLPRSGKRGKLWKKGRDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGEDENPETLAELSEQSNPILAGDSLKHTVPHSNGSSYSDKLMESLLGKHHPRWIANYHLHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPIGESVPDPKPEVSKAEEEQPEVETWQLSTKLRNRFTKRQCTNLAHLLTLRSQRIKIGGYTVCGECARVVRWEDLKK* 1369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2848 1368 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1020 1188 IPR001650 -
Mtr1g2848 1368 MobiDBLite consensus disorder prediction 492 507 - -
Mtr1g2848 1368 MobiDBLite consensus disorder prediction 368 391 - -
Mtr1g2848 1368 MobiDBLite consensus disorder prediction 32 71 - -
Mtr1g2848 1368 MobiDBLite consensus disorder prediction 351 365 - -
Mtr1g2848 1368 Coils Coil 79 106 - -
Mtr1g2848 1368 Pfam SNF2-related domain 634 936 IPR000330 GO:0005524|GO:0140658
Mtr1g2848 1368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 866 IPR027417 -
Mtr1g2848 1368 CDD SF2_C_SNF 1008 1151 - -
Mtr1g2848 1368 MobiDBLite consensus disorder prediction 447 477 - -
Mtr1g2848 1368 MobiDBLite consensus disorder prediction 93 126 - -
Mtr1g2848 1368 PANTHER RAD54-LIKE 452 1366 - -
Mtr1g2848 1368 PANTHER RAD54-LIKE 56 407 - -
Mtr1g2848 1368 Gene3D - 585 866 IPR038718 -
Mtr1g2848 1368 Gene3D - 877 1218 IPR027417 -
Mtr1g2848 1368 MobiDBLite consensus disorder prediction 426 520 - -
Mtr1g2848 1368 SMART ultradead3 608 829 IPR014001 -
Mtr1g2848 1368 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 634 817 IPR014001 -
Mtr1g2848 1368 MobiDBLite consensus disorder prediction 93 120 - -
Mtr1g2848 1368 Coils Coil 130 157 - -
Mtr1g2848 1368 SMART helicmild6 1043 1140 IPR001650 -
Mtr1g2848 1368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 872 1207 IPR027417 -
Mtr1g2848 1368 MobiDBLite consensus disorder prediction 1294 1313 - -
Mtr1g2848 1368 Pfam Helicase conserved C-terminal domain 1016 1140 IPR001650 -
Mtr1g2848 1368 MobiDBLite consensus disorder prediction 350 409 - -
Mtr1g2848 1368 PANTHER RAD54-LIKE 452 1366 IPR044574 GO:0016887
Mtr1g2848 1368 PANTHER RAD54-LIKE 56 407 IPR044574 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2848 Mtr-Chr1 39614055 39641916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2848 642 1193 RAD5 or RAD16-like Gene Family AT5G43530 24.842 6.71e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr1g2848 SNF2_N 2.1e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2848 K10779 - sind:105161157 1624.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2848 1 39614055 39641916 Mtr1g2848 1 39614055 39641916 ECH