Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2846 ATGGGTAAGAAAAACAAAGCAATGAAGGAAAATAGCGACGGCACCGTTAAACAATGTCCGTTAACACTCTTTGTTTCTAATTTACCCTATTCCTTCACTAACTCTCAGCTTGAACAAACTTTCAGTGAAGTTGGACCTGTTAGACGCTGTTTCATGGTTACACAAAAGGGGTCTACACAACATCGTGGTTTTGGTTATGTTCAATTTGCTGTTGAGAAAGACGCTAACCAAGCCATTGAGCTGAAGAACAGTTCATTGGTTGGTGACCGGAAAATTGTAGTGAAGCACGCAATCCCTCGTCCTCCCCGTGAAAATCGAAGATCGAAACCGGATCAAGAGGGCAATGAAGGCGATCTCACAGAATCAAAAAATGATGATAAAGACAGCGAATTATCTGGAGCAGAGAAGCCTGTTTCAGTTCCAAAAGAACCAAAAGAAGAAGTGAAAGTTTTGGATAAACCGAAAAACTCAAGGAAGCCTGTGGAAATAAAAAAAGCAGCTCTTTGTAATGACGCAGCAGATGAGGGGGGTGGCTCAGAAAAACAGAAGGTTGCTAGAACTGTTATATTTGGTGGTCTCGTGAATTCTGCTATGGCTGAAGATGTTCACCGCCAAGCCAGAGAAATCGGCACTGTGTGTTCTATTAAGCATCCCCTTTCAAGGAATGATCTTCAGCAGCATGGTCTGCTGCAAGAAGGCTGTACTTTCAATGCTTCAGCTGTACTTTATACAAGTGTAAAATCAGCCCGTGCTTCTGTTGCAACATTGCATAAAAAAGAGATAGGAGGGGGAACTGTTTGGGCACGCCAACTTGGTGGGGAGGGAGCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCCAAAGAAAATGAAATAAGGGACGCATTTTCATCTGCGGGGACTGTATGGGAGGTATTCATTCCACAGAAGTCCGACACAGGTCTTTCAAAGGGTTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCTGAAAATGCGATTCGAAAACTCAATGGATCGAAGTTTGGGAGTCGTCTCATAGCTGTTGATTGGGCTGTTCCAAAAAAGATATTTAGTAGTGATACCAATGACGCTCCTGCTTCAGAGGAAGGACAACAAAAGGTGACAGATGAAGATGGTAGTACAACTACTGAGGATGATCTTGAGAATACTGACAAAAAATCTGATCAAGGAGATGATAGTGACATTGATAGTGTTGTGGAGGAAGATGTTCCTTCTGAAGATGATTTTGACAAGGAAGCAGACATTGCAAGAAAAGTTCTTAACAACTTGATTACATCCTCTGCCAAAGACGAATCTGTAAATAACGATTCCGTGTCTTCTGAAGAAAAGAACAAGCCAAAATCCAAGGAAACTGTTAAGGGTGCAGATAGTAAAACATCTAAAGAGTCCGACAAGGTTTCAGATATTTCTAAGCCTGAAACTTCCAAGGAAACAGAAGATGATTTGCACAGAACAGTTTTTATAACCAATCTTCCCTTTGAATTAGATACCGAAGAACTGAAGCAACGGTTTTCTGCATTTGGTGAAGTAGAATATTTTGCTCCTGTTCTCCACCAAGTGACCAAGCGTCCACGAGGGACTGGTTTTCTTAAGTTTAAAACCGCGGAAGCAGCTGATAATGCAATTTCAACTGCCAATACTGCTTCTGGGATGGGTATTTTGGTAAAGGGTAGACCATTAAAGGTTTTAAAGGCTCTGGACAAGAAATCGGCTCATGACAAGGAACAGGAGAAAGAAAAAAATGAAGTTCAAGACCACCGCAATCTTTACTTGGCGAAGGAGGGACTTATTCTTGACGGAACTCCAGCTGCCGAAGGGGTTTCAGCCACTGATATGTCAAAACGCAAAAATTTGGAAAGGAAAAAGAAGACGAAGCTTCAATCTCCAAATTTTCATGTTTCAAAAACTAGACTTGTTATCTACAACTTACCAAAGTCAATGACTGAAAAACAACTTAAGACGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAATACCTGTAATTCGGCAGATAAAGATTTTGAAAGATGGCAGGAAAGGAAAGGCTACTCAAGAACAGCAGTATTCCCGTGGAGTCGCTTTTCTTGAATTTTCAGAGCATCAACATGCTCTTGTTGCTTTGAGAGTTCTTAACAATAATCCTGAAACCTTTGGTCCTGAACATCGGCCAATTGTGGAGTTTGCTCTTGATAATATCCAGAAATTGAAACTTCGTAACGAAAAGCTACAGTATCAGCAGCGGGCTCCTCACAATGGCAACAGCAGAAACGAAAATGATAAACCCAACAATGCGGGAGTTTACACACATGGAACTGACAGAAAACGAAAATCTCAAGAGCATGGCAAACCAGCAAAAGACTTGGCACCAGATTCAAATAGTGAACACGGTGGTAGAGTGCCAAATGGAAAATCTCCTCAAGGAGGCAAATCCAAAAGACAGAAAGGGGACCCCAAGAGTACAAATACCGATGTGATCTCATCGAAAGAAAGTCCAAAAGCTTCTTCGGCAAGGAAGCTAAAAAATAACCAAGATGGCCAGAATCATGGTGCTAAATTACATGAAGGTAAAAATAGTTCCATTGACAGTAATAGGAAAATATCAGGTAAGAAAGAAGACGCAGTATTTGGAAAGAGGAAGATGCATAACCAAGAACAAGCAGGGGAAAAGGTTTCTAGGAAAAGGCCAAAGAAGAACAAAGATTCAGTAGGGAAGGACACAGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACACAAGGGTTCTCAAGGAAATGATGGTGAGAAAAAACAATCTAAACAGCTTAGGAAATGGTTCCAATCATAA 2886 0.4106 MGKKNKAMKENSDGTVKQCPLTLFVSNLPYSFTNSQLEQTFSEVGPVRRCFMVTQKGSTQHRGFGYVQFAVEKDANQAIELKNSSLVGDRKIVVKHAIPRPPRENRRSKPDQEGNEGDLTESKNDDKDSELSGAEKPVSVPKEPKEEVKVLDKPKNSRKPVEIKKAALCNDAADEGGGSEKQKVARTVIFGGLVNSAMAEDVHRQAREIGTVCSIKHPLSRNDLQQHGLLQEGCTFNASAVLYTSVKSARASVATLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRKLNGSKFGSRLIAVDWAVPKKIFSSDTNDAPASEEGQQKVTDEDGSTTTEDDLENTDKKSDQGDDSDIDSVVEEDVPSEDDFDKEADIARKVLNNLITSSAKDESVNNDSVSSEEKNKPKSKETVKGADSKTSKESDKVSDISKPETSKETEDDLHRTVFITNLPFELDTEELKQRFSAFGEVEYFAPVLHQVTKRPRGTGFLKFKTAEAADNAISTANTASGMGILVKGRPLKVLKALDKKSAHDKEQEKEKNEVQDHRNLYLAKEGLILDGTPAAEGVSATDMSKRKNLERKKKTKLQSPNFHVSKTRLVIYNLPKSMTEKQLKTLCIDAVISRATKQIPVIRQIKILKDGRKGKATQEQQYSRGVAFLEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNIQKLKLRNEKLQYQQRAPHNGNSRNENDKPNNAGVYTHGTDRKRKSQEHGKPAKDLAPDSNSEHGGRVPNGKSPQGGKSKRQKGDPKSTNTDVISSKESPKASSARKLKNNQDGQNHGAKLHEGKNSSIDSNRKISGKKEDAVFGKRKMHNQEQAGEKVSRKRPKKNKDSVGKDTVDKLDMLIEQYRSKFSHKGSQGNDGEKKQSKQLRKWFQS* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2846 961 MobiDBLite consensus disorder prediction 619 640 - -
Mtr1g2846 961 MobiDBLite consensus disorder prediction 92 157 - -
Mtr1g2846 961 MobiDBLite consensus disorder prediction 760 781 - -
Mtr1g2846 961 PANTHER RNA BINDING PROTEIN 409 759 - -
Mtr1g2846 961 PANTHER RNA BINDING PROTEIN 10 490 - -
Mtr1g2846 961 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 352 IPR000504 GO:0003723
Mtr1g2846 961 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Mtr1g2846 961 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 499 560 IPR000504 GO:0003723
Mtr1g2846 961 MobiDBLite consensus disorder prediction 407 422 - -
Mtr1g2846 961 SUPERFAMILY RNA-binding domain, RBD 277 362 IPR035979 GO:0003676
Mtr1g2846 961 MobiDBLite consensus disorder prediction 93 157 - -
Mtr1g2846 961 Gene3D - 2 133 IPR012677 -
Mtr1g2846 961 Gene3D - 268 392 IPR012677 -
Mtr1g2846 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 649 740 IPR000504 GO:0003723
Mtr1g2846 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Mtr1g2846 961 MobiDBLite consensus disorder prediction 785 808 - -
Mtr1g2846 961 MobiDBLite consensus disorder prediction 863 934 - -
Mtr1g2846 961 CDD RRM3_RBM28_like 497 578 - -
Mtr1g2846 961 MobiDBLite consensus disorder prediction 364 425 - -
Mtr1g2846 961 CDD RRM2_RBM28_like 282 358 - -
Mtr1g2846 961 Gene3D - 436 595 IPR012677 -
Mtr1g2846 961 Gene3D - 648 744 IPR012677 -
Mtr1g2846 961 Coils Coil 741 761 - -
Mtr1g2846 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 497 580 IPR000504 GO:0003723
Mtr1g2846 961 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 10 490 - -
Mtr1g2846 961 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 409 759 - -
Mtr1g2846 961 MobiDBLite consensus disorder prediction 448 493 - -
Mtr1g2846 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 359 IPR000504 GO:0003723
Mtr1g2846 961 MobiDBLite consensus disorder prediction 376 406 - -
Mtr1g2846 961 MobiDBLite consensus disorder prediction 442 493 - -
Mtr1g2846 961 CDD RRM1_RBM28_like 22 100 - -
Mtr1g2846 961 SUPERFAMILY RNA-binding domain, RBD 496 728 IPR035979 GO:0003676
Mtr1g2846 961 CDD RRM4_RBM28_like 649 747 - -
Mtr1g2846 961 MobiDBLite consensus disorder prediction 759 961 - -
Mtr1g2846 961 MobiDBLite consensus disorder prediction 835 862 - -
Mtr1g2846 961 SUPERFAMILY RNA-binding domain, RBD 22 267 IPR035979 GO:0003676
Mtr1g2846 961 MobiDBLite consensus disorder prediction 941 955 - -
Mtr1g2846 961 SMART rrm1_1 650 742 IPR000504 GO:0003723
Mtr1g2846 961 SMART rrm1_1 22 95 IPR000504 GO:0003723
Mtr1g2846 961 SMART rrm1_1 282 355 IPR000504 GO:0003723
Mtr1g2846 961 SMART rrm1_1 498 576 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2846 Mtr-Chr1 39596265 39605535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2846 285 360 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 4.58e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2846 K14573 - gmx:100794821 1300.42