Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2842 ATGACTACTAATACAAGGGCAATTAAGGCCCTTGAGGCTATGAAGGACTTAGGAATCTCGGAGGACGAGGTGAGACCGGTGTTGCTAAAGTTGTATAAATTGTATGATAAAAAATGGGAGCTTATTGAAGATGACAATTATCGGACACTTATAGATGCATACTTTGAGTCAAAGGAAGATAAGGCATACTTTGAGTCAAAGGAAGATAAGCAAGAAGAACATAAGAGAAAAGCTCCAGCAAGTTGTCATGATGGAGAGAAACCTAAACAGAAACTTCACTTGGTCGATATAGACAACCAGGTTTTGTCAGCTGACAACTCAAGACAAGTGTTGTCTGTAGAAGACACTGGCATACCTTCCAAGACTTTTAAACAGGAAACTATGAAACCTTCTCAAATTTCCAGGCAAGATATGAAGCTCACAACCAATTCGCAGGCATTCATGGCTGCTAGAGATAGAAAGATTTATCCTGGGGCAGCATCATCTGAAGGTCGCTGTAAAGATCCAATTGATGGACCTTGCCATCGTTCTATTCAGAGGAAAAATATGTCAAGAGGAAATGATAAACCTAAGTCTCATCCCGGATCTGTTTCGACAAGTTGCAATGGCTCACTAAATGCTTCCAATGGAAATCTTACTGTCAAATCCCTGTCAAGAGGAAATGATAAACCTAAGTTTTATCCCGGATCTGTTTCGACAAGTTGCAATGGCTCACTAAATGCTTCCAATGGAAATCTTACTGTCAAATCCCTGTCAGATGTGTATCAGAATACACACAAGATAGAAGCTACTCCCACATGCAATAATAACACCAGAACCAGTAAGGGTAATATTGATATTGGTTCTTCTTCACCCTTGGGAGAAGTTAAATCTTCTTTAGATTGTGATGCTGCATTAAGGACTGGCTTGAATTTAAGTCGAAATGGGTCAAGGCAAACTCTTTCTGAGGATAAAAAGAAATCCTTTCGATATGTCGAAGACATTACAAAAGGTTCTGAAAACATTAAAATATCATTATTAGATGAAACCAACAGTGAGGATTTTCCAAAATTTAATTACATTCCATGTAACACACTGTATCAAAGTGCAAATGTTAATATTTCACTTGCTCGGATTGCGGATGAGGATTGCTGCTCCGATTGTTTAGGCGACTGTCTTTCCTTGTCAGTTCCTTGTGCATGCTCTCAAGAAACTGGTGGAGAGTTTGCTTACACTTCACAAGGTTTGTTGAGTGAGAAGTTTTTAACAGATTGCATGTCTATGGTAAAGGAACCCCAGCATCATCATTATGTGTTTTGTAAGGAGTGCCCAATTGAGAGGACCAAGAATGAGACCAAACCTGAATCATGCAAGGGACATCTGGTTAGGAAGTTTATAAAGGAGTGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGAGGTTTAAGCCGTAAATTGCAGGTGTTCTTGACTCAAGAAGGAAAGGGCTGGGGCGTTAGAACGCTAGAAGATTTGCCCAAGGGATCCTTTGTCTGTGAATATGCAGGGGAGATTTTAACCAATTCAGAATTATATGACAGGATTGTGTATAGTACCGGCAATGATAGACATACATATCCTGTAACACTTGATGCAGACTGGGGCTCGGAAGTGGGATTACAGGATGAAGAGGCATTATGCTTGGATGCAACAAATAATGGGAATGTTGCAAGATTCATCAATCATAGATGCTCCGATGCAAATCTAATAGACATTCCTGTTGAAGTGGAGACACCTGACCGCCACTATTATCATCTTGCCCTCTTTACAAACAAAGATGTGAGTGCATACGAGGAGTTGACCTGGGATTATGGCATTGACTTTGATGACCATACCCATCCTATTGAAGCATTTCAATGTTGTTGTGGAAGCGCTTTCTGCCGTGATAGAAAACAAAAAGGAATTAGATTAGCAAAGACAAAAAAAGTCAAGCATACACATACAAAGAAATAA 1989 0.4002 MTTNTRAIKALEAMKDLGISEDEVRPVLLKLYKLYDKKWELIEDDNYRTLIDAYFESKEDKAYFESKEDKQEEHKRKAPASCHDGEKPKQKLHLVDIDNQVLSADNSRQVLSVEDTGIPSKTFKQETMKPSQISRQDMKLTTNSQAFMAARDRKIYPGAASSEGRCKDPIDGPCHRSIQRKNMSRGNDKPKSHPGSVSTSCNGSLNASNGNLTVKSLSRGNDKPKFYPGSVSTSCNGSLNASNGNLTVKSLSDVYQNTHKIEATPTCNNNTRTSKGNIDIGSSSPLGEVKSSLDCDAALRTGLNLSRNGSRQTLSEDKKKSFRYVEDITKGSENIKISLLDETNSEDFPKFNYIPCNTLYQSANVNISLARIADEDCCSDCLGDCLSLSVPCACSQETGGEFAYTSQGLLSEKFLTDCMSMVKEPQHHHYVFCKECPIERTKNETKPESCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLSRKLQVFLTQEGKGWGVRTLEDLPKGSFVCEYAGEILTNSELYDRIVYSTGNDRHTYPVTLDADWGSEVGLQDEEALCLDATNNGNVARFINHRCSDANLIDIPVEVETPDRHYYHLALFTNKDVSAYEELTWDYGIDFDDHTHPIEAFQCCCGSAFCRDRKQKGIRLAKTKKVKHTHTKK* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2842 662 MobiDBLite consensus disorder prediction 159 221 - -
Mtr1g2842 662 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 208 - -
Mtr1g2842 662 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 208 655 - -
Mtr1g2842 662 Gene3D SET domain 328 642 IPR046341 -
Mtr1g2842 662 SMART preset_2 325 467 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr1g2842 662 Pfam SET domain 495 617 IPR001214 GO:0005515
Mtr1g2842 662 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 655 IPR025776 -
Mtr1g2842 662 MobiDBLite consensus disorder prediction 65 87 - -
Mtr1g2842 662 CDD SET_SETDB-like 349 617 - -
Mtr1g2842 662 ProSiteProfiles SET domain profile. 483 617 IPR001214 GO:0005515
Mtr1g2842 662 SUPERFAMILY SET domain 335 640 IPR046341 -
Mtr1g2842 662 Pfam Ubiquitin-binding WIYLD domain 4 59 IPR018848 GO:0018024
Mtr1g2842 662 Gene3D - 1 60 IPR043017 -
Mtr1g2842 662 SMART set_7 483 623 IPR001214 GO:0005515
Mtr1g2842 662 MobiDBLite consensus disorder prediction 189 218 - -
Mtr1g2842 662 ProSiteProfiles Pre-SET domain profile. 377 480 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr1g2842 662 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 208 655 - -
Mtr1g2842 662 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 208 - -
Mtr1g2842 662 Pfam Pre-SET motif 328 475 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2842 Mtr-Chr1 39568200 39577544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2842 325 640 Su(var)3-9 homologs AT5G04940 27.976 1.00e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr1g2842 Pre-SET 4.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2842 - - mtr:MTR_1g080340 1167.91