Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2841 ATGTCTTCGTCTATTCCATCTTCCTCGATGCAGGCTGCATCAATCAATTCCAATATCAGAAGTGTTGGACACATGTTTTCAACCCCTTCTGAACAGCCTGATAACGTCCATTTTTCCTCTGCTTCAGAAATACATTCTATGACATTCCCTCAAGAAAGTGATGTTATGTCCTGGGGAACTGATCCATTTGAAGATATTCTTCAATTTCATGATAATGTTCCCACCCAGAATGACCATGTGGAATACAATGGTTCTGAAGTCTTGGGTGGAAATGCCAAAACAACGGATTTCAAGGAGTGGGTTGATCAGTTGATGTCAGTCGATGATGATTCTATTCAGCCTAATTGGAATGAACTTCTCGGCGACAATAATATGGCAGAACCAAAATCACAGGATGCACAAATGTCCCCTTCTCTCTTGATGCAAGAGACTCAGGTTTCACAGCAGCAGTATATACCATCACTACCATCTAAAGAAGTTAATGATCTTCCCAATTCTTCTGTGTCGACTACATCGCAATCTAAGCCTAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGCGAGAAGGCTACTCCAAAGGGTGTCTTGAACTTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCATCTGCAGAAATATAGAACTGCCAGATACAAACCAGAATCATCAGAAGGAATTCCAGAGAAGAAGTTGACTTCAATCGACGAAATGCCGTCTATAGACTTAAAAACGCCTAAGGGGATTACAGAAGCATTGCGGCTGCAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAATTTACAGATTCAGATTGAGAACCAAGGGAAGCATCTACAGATGATGTTTGAGCAACAGATGAAGTCGGATGAGCCTTCTGCTCCACTATCAAGTGCCGCGGTACCTTCTCCAGTTGAAAATTTAGAAAACACAAATGAAGGTCACGAAAAAATTGGAATCAATGGCAGCGCTTCAGAGAACATGCCTGAAGGAAGTTCCCAGAATACAAGCACAGAGCAAAAGGGAGATGATGCTAAAGCTACCGGTGAACTTGAGCTGGGAGAAGACCAACTTACCGCACCACCCACAAAACGAGTGAAGACTGACAAGTAG 1167 0.4302 MSSSIPSSSMQAASINSNIRSVGHMFSTPSEQPDNVHFSSASEIHSMTFPQESDVMSWGTDPFEDILQFHDNVPTQNDHVEYNGSEVLGGNAKTTDFKEWVDQLMSVDDDSIQPNWNELLGDNNMAEPKSQDAQMSPSLLMQETQVSQQQYIPSLPSKEVNDLPNSSVSTTSQSKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEGIPEKKLTSIDEMPSIDLKTPKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKHLQMMFEQQMKSDEPSAPLSSAAVPSPVENLENTNEGHEKIGINGSASENMPEGSSQNTSTEQKGDDAKATGELELGEDQLTAPPTKRVKTDK* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2841 388 MobiDBLite consensus disorder prediction 343 360 - -
Mtr1g2841 388 SUPERFAMILY Homeodomain-like 173 229 IPR009057 -
Mtr1g2841 388 MobiDBLite consensus disorder prediction 304 388 - -
Mtr1g2841 388 Coils Coil 263 283 - -
Mtr1g2841 388 Pfam MYB-CC type transfactor, LHEQLE motif 262 306 IPR025756 -
Mtr1g2841 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 172 232 IPR017930 -
Mtr1g2841 388 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 6 386 - -
Mtr1g2841 388 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 175 229 IPR006447 GO:0003677
Mtr1g2841 388 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 6 386 IPR044848 GO:0003700
Mtr1g2841 388 MobiDBLite consensus disorder prediction 156 178 - -
Mtr1g2841 388 MobiDBLite consensus disorder prediction 321 336 - -
Mtr1g2841 388 Gene3D - 174 233 - -
Mtr1g2841 388 Pfam Myb-like DNA-binding domain 177 228 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2841 Mtr-Chr1 39561843 39566158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2841 17 304 G2-like Transcription Factor Family AT4G28610 49.673 1.86e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr1g2841 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2841 - - mtr:MTR_1g080330 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2841 1 39561843 39566158 Mtr1g2841 1 39561843 39566158 ECH
Mtr7g2936 7 46149994 46156644 Mtr1g2841 1 39561843 39566158 PCT
Mtr7g3792 7 54776214 54780485 Mtr1g2841 1 39561843 39566158 PCT