Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2833 ATGACGACACCACCTTCATCCTCATCATCTCAACCCCAATTCACATATTCCAACGCCCCTTACTTTCCCGTTCCCTTTCACCTTCAACAACCCGCAACCACCTCTCACTACGCCGCACCCTACGTTGCCGCCCCCGCCGTGCAACTTCCTCCGCCGCCAATTGTCGGTCCTGTTCCACCGCCTGCTGCTTACTCCGTTCCGCAATATCAAGCACAGCAATTGTTTGAGAGAGATGCACAGATAATAACTCCGGAGGCTCTTGAGAATGTGAAGGCGGCAATTGCGAGTAGCGATGTTGAGCATAAAGCTGAGACCAAGAAGAAAGCGGTTCCTCGTAAAGCTGCTGGTCAAGCTTGGGAGGATCCTATTCTTGCTGAGTGGCCTGAAGATGATTATCGGCTCTTCTGCGGTGATCTTGGGAATGAAGTCAATGATGATGTTCTTTCGAAAGCATTCACGCGATTCCCTTCCTTTAACATGGCAAGAGTTGTTAGAGATAAGCGAACTGGAAAAACAAAGGGCTATGGATTTATAAGCTTTGCTAACCCTGCTGACCTCGCTGCTGCTCTTAAAGAAATGAATGGTAAGTACGTCGGAAATCGGCCAATAAAACTACGCAAGAGTAAGTGGAGGGAGAGAACTGATTATGATGCATTGGAGAAACAGAAGAACCATATTCAGAAGAAGCCAAAAATGTCAAGAAAGAGTATTCTGCACAAGTGA 723 0.4744 MTTPPSSSSSQPQFTYSNAPYFPVPFHLQQPATTSHYAAPYVAAPAVQLPPPPIVGPVPPPAAYSVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKAETKKKAVPRKAAGQAWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAALKEMNGKYVGNRPIKLRKSKWRERTDYDALEKQKNHIQKKPKMSRKSILHK* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2833 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Mtr1g2833 240 SMART rrm1_1 133 206 IPR000504 GO:0003723
Mtr1g2833 240 Gene3D - 71 206 IPR012677 -
Mtr1g2833 240 CDD RRM_RBM42 126 208 IPR034215 -
Mtr1g2833 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 204 IPR000504 GO:0003723
Mtr1g2833 240 SUPERFAMILY RNA-binding domain, RBD 116 212 IPR035979 GO:0003676
Mtr1g2833 240 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 36 240 - -
Mtr1g2833 240 PANTHER RNA-BINDING PROTEIN 42-LIKE 36 240 - -
Mtr1g2833 240 MobiDBLite consensus disorder prediction 221 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2833 Mtr-Chr1 39475841 39480989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2833 79 212 Eukaryotic Initiation Factors Gene Family AT1G71770 23.741 1.01e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2833 K25079 - gmx:100791946 382.104