Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2828 ATGTGCGAAACCCTAAAAACTAAGTACCAACTCAGCGAGGAGATCGGTCGTGGTCGTTTCGGTACCATTTTCCGGTGCTACCACCCTGACTCCGCCGTACCAACAGCCGTCAAAGTTATCGACAAATCTCTCCTCGCCGATTCCACTGATCGCGAGTGTCTCGAAAACGAACCTAAATTCCTCTCTCTTCTTTCACCTCACCCTAACATCCTTCAAATCTTCGACGTTTTTGAAAACGACGATTTCTTATCCATCGTCTTAGAGCTTTGTCAACCTCACACTCTCCTCGACCGTATCGTTGCGAATCCTTTAACGGAACAACAAGCCGCTGCGATAATCAAAAAGCTTCTCGAAGCCGTTGTTCACTGCCACCGTCTCGGTGTCGCTCATCGCGATATCAAGCCGGATAACATTCTCTTTGATTCTGAAGATAATCTCAAATTAGCTGATTTCGGTTCGGCGGAATGGTTCGGCGACGGCGAGAAAATGAGTGGAGTCGTCGGAACACCGTATTACGTGGCACCGGAGGTTCTATTAGGAAGAGATTATACAGAGAAAGTTGATGTGTGGAGCTGTGGTGTGCTTTTGTACATAATGTTGAGCGGGATTCCTCCGTTTTACGGTGATTCTACGGCTGAGATTTTTGAGTCAGTTATTAGAGCGAATCTCAGGTTTCCTTCTAGAATCTTCCGTTCTGTTTCTTCTTCTGCTAAGGATCTGTTGAGGAAGATGATGTGTAGAGATGATTCTAGAAGATTTTCTGCTGAACAAGCCTTGGCGCATCCTTGGATAGTGAGTGGAGGTGAAGCAATGAATCTGAATTAG 825 0.4606 MCETLKTKYQLSEEIGRGRFGTIFRCYHPDSAVPTAVKVIDKSLLADSTDRECLENEPKFLSLLSPHPNILQIFDVFENDDFLSIVLELCQPHTLLDRIVANPLTEQQAAAIIKKLLEAVVHCHRLGVAHRDIKPDNILFDSEDNLKLADFGSAEWFGDGEKMSGVVGTPYYVAPEVLLGRDYTEKVDVWSCGVLLYIMLSGIPPFYGDSTAEIFESVIRANLRFPSRIFRSVSSSAKDLLRKMMCRDDSRRFSAEQALAHPWIVSGGEAMNLN* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2828 274 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Mtr1g2828 274 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2 3 272 - -
Mtr1g2828 274 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2828 274 CDD STKc_CAMK 8 263 - -
Mtr1g2828 274 SUPERFAMILY Protein kinase-like (PK-like) 5 266 IPR011009 -
Mtr1g2828 274 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Mtr1g2828 274 Gene3D Transferase(Phosphotransferase) domain 1 93 273 - -
Mtr1g2828 274 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2828 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Mtr1g2828 274 PIRSF ILK 2 260 - -
Mtr1g2828 274 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 272 - -
Mtr1g2828 274 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2828 Mtr-Chr1 39432607 39433895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2828 3 270 EF-hand Containing Proteins AT1G50700 39.706 2.33e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Mtr1g2828 Pkinase 5.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2828 - K08794 gmx:548089 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2828 1 39432607 39433895 Mtr7g3819 7 55032125 55033182 ECH
Mtr1g2828 1 39432607 39433895 Mtr1g2828 1 39432607 39433895 ECH