Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2820 ATGGCGAACAGGTGGTGGACCGGACCGGTTGGTCTAGGAGGGATGGACAACTCAGTAACCTCCTCTCCACTAGGAAAACCGGATCTGGGTTTCTCCATGAATCAAAGTGCTGTAACAGGAGTGAACAACATGAACAACAACAACAATGAAGAAGAAGAAGATGAGAAAGAAAACAGCGACGAACACAAAGGAGGTGCAATAGAAACAAACACCTCCACGCGCCGCCCAAGAGGCCGTCCATCAGGTTCAAAAAACAAACCAAAACCACCAATATTCATAACAAGAGATAGCCCTAACGCGCTACGAAGCCATGTCATGGAAGTAGCAACAGGAACAGATATATCAGATAGCATCGTTCAGTTTGCAAGAAAAAGACAGAGAGGTATTTGCATTCTAAGCGCAAGTGGAACCGTCGTTAACGTTTCTCTCCGGCAACCTACAGGTCCCGGAGCTGTGGTAGCGCTTCCAGGGAGATTTGATATACTCTCTTTGACTGGTTCTGTGCTTCCTGGACCTTCACCGCCGGGAGCTACTGGTTTGACTATTTATCTTTCTGGAGGACAAGGACAGGTGGTTGGCGGCGGAGTTGTTGGTCCCCTTGTGGCGGCAGGACCAGTTATGTTGATGGCGGCGACATTTTCGAATGCTACGTATGAGAGGCTGCCGGTTGAGGATGGTGATGATCAAGAAGGGCATCAGGGTGGTGGTGGTGATGATGAGTCTCCGACGCGTGCAGCGGGGATGGGACAGTTAGCGATTGGATCTGTTGGAGAAGGTTCTTCAATTCCACCAGGCTATAACAATGTTGGTGGTAATTTGGGTGTTTCAAATGGAGGACAACAACAATTGTTGAATAATCATGAAGCTTATAATAATTCTCCTTGGGGTCATGCTAGTCATGGTAGACCACCATACTAA 918 0.4804 MANRWWTGPVGLGGMDNSVTSSPLGKPDLGFSMNQSAVTGVNNMNNNNNEEEEDEKENSDEHKGGAIETNTSTRRPRGRPSGSKNKPKPPIFITRDSPNALRSHVMEVATGTDISDSIVQFARKRQRGICILSASGTVVNVSLRQPTGPGAVVALPGRFDILSLTGSVLPGPSPPGATGLTIYLSGGQGQVVGGGVVGPLVAAGPVMLMAATFSNATYERLPVEDGDDQEGHQGGGGDDESPTRAAGMGQLAIGSVGEGSSIPPGYNNVGGNLGVSNGGQQQLLNNHEAYNNSPWGHASHGRPPY* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2820 305 Coils Coil 41 61 - -
Mtr1g2820 305 PIRSF ESCAROLA 20 305 IPR014476 GO:0003680
Mtr1g2820 305 Gene3D - 101 230 - -
Mtr1g2820 305 MobiDBLite consensus disorder prediction 223 237 - -
Mtr1g2820 305 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 305 IPR014476 GO:0003680
Mtr1g2820 305 MobiDBLite consensus disorder prediction 14 47 - -
Mtr1g2820 305 Pfam Plants and Prokaryotes Conserved (PCC) domain 102 215 IPR005175 -
Mtr1g2820 305 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 225 - -
Mtr1g2820 305 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 8 305 - -
Mtr1g2820 305 ProSiteProfiles PPC domain profile profile. 98 233 IPR005175 -
Mtr1g2820 305 CDD DUF296 102 185 IPR005175 -
Mtr1g2820 305 MobiDBLite consensus disorder prediction 1 98 - -
Mtr1g2820 305 MobiDBLite consensus disorder prediction 223 280 - -
Mtr1g2820 305 MobiDBLite consensus disorder prediction 261 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2820 Mtr-Chr1 39351732 39353417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2820 1 305 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 51.582 2.10e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2820 - - qsu:112038015 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2820 1 39351732 39353417 Mtr1g2820 1 39351732 39353417 ECH