Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2817 ATGGAAGACACCAACAACCACAACAATCAAGTGACCTCATTGTTCGAGCAACAAAGCACCGTTAACGTCACTCCTGAACTTAACGGAACAACCACTGATGGGTCCCACCACTCCGTTACGGAGAACAAGAAGAAGCGTGGTAGGCCCAGAAAGTACGAGTCTCCCGAGGAAGCTATCGCCGGAAGGAAAGCTATCGCCGCTAGAAAAGCCGCCGCCGCCGCCGCAGCTGCTGCTAACGCTACCGCTACGACATCGTTTTCGTCTCCTAACTTTACCAAGCCTAAAAAGTTTCATTCCTCTTCTCTAGGGAATTCAAGAGAGGGTTTCAATATCCACTTTGTTACTGTTGCTCCTGGTGAGGATATTGGCCAAAATATTATGATGCTCATGCAAAAAAATAGTAGGTGTGAGATGTGCATTCTGTCTGCATCTGGTTCCATCTCTAGTGCCACCCTTCGTCAGCCAGCAACCTCCGGAGGCAATATTACTTACGAGGGTCGCTTTGACATAATTTCACTTACTGGATCATATGTCCGTAATGAACTTGATGGTCGTTCTGGTGGTCTCAGTGTATGCTTATCCCATTCTGATGGGCAGCTTGTAGGTGGAAGCATTGCTGGACCCCTTAAGGCCGCTAGTCCAGTTCAGGTCATTGCTGGCACATTTTCTATTCCCTCCAAGGACCCTGGTGCTGGTATAAAAGGCGATGTTTCTACCAGCAAGTTACCATCGCCAGTTGGTGAGCCAACATCAAATTTAGGTTTCCGCCCAGCAATTAACTCTTCCAATGGGAATGCAATCCCAGGAAACAAGGAACATCAAGTTATTGGGGGAAGTCATTTCATGCCTCAGCAATATGGTGTAAATGTGGTACCTTTCCATCCCTCGGATTGGGGAAGTCGTCCAGATTCAAGAAATGCTGGCTTTGAACTGATAGGAAGAACAGGTCACGGAGCAAACCACTCTCCTGAGAATGGAAACTATTCCTGA 990 0.4758 MEDTNNHNNQVTSLFEQQSTVNVTPELNGTTTDGSHHSVTENKKKRGRPRKYESPEEAIAGRKAIAARKAAAAAAAAANATATTSFSSPNFTKPKKFHSSSLGNSREGFNIHFVTVAPGEDIGQNIMMLMQKNSRCEMCILSASGSISSATLRQPATSGGNITYEGRFDIISLTGSYVRNELDGRSGGLSVCLSHSDGQLVGGSIAGPLKAASPVQVIAGTFSIPSKDPGAGIKGDVSTSKLPSPVGEPTSNLGFRPAINSSNGNAIPGNKEHQVIGGSHFMPQQYGVNVVPFHPSDWGSRPDSRNAGFELIGRTGHGANHSPENGNYS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2817 329 Gene3D - 110 234 - -
Mtr1g2817 329 MobiDBLite consensus disorder prediction 301 329 - -
Mtr1g2817 329 MobiDBLite consensus disorder prediction 1 57 - -
Mtr1g2817 329 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 222 IPR005175 -
Mtr1g2817 329 MobiDBLite consensus disorder prediction 1 36 - -
Mtr1g2817 329 CDD DUF296 110 222 IPR005175 -
Mtr1g2817 329 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 4 323 - -
Mtr1g2817 329 MobiDBLite consensus disorder prediction 238 257 - -
Mtr1g2817 329 MobiDBLite consensus disorder prediction 83 102 - -
Mtr1g2817 329 SUPERFAMILY AF0104/ALDC/Ptd012-like 108 222 - -
Mtr1g2817 329 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 4 323 IPR039605 GO:0003680
Mtr1g2817 329 ProSiteProfiles PPC domain profile profile. 105 245 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2817 Mtr-Chr1 39330279 39335797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2817 43 328 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 44.262 5.45e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2817 - - gmx:100809675 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2817 1 39330279 39335797 Mtr1g2817 1 39330279 39335797 ECH