Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2811 ATGATGAAAAAGGAATCAAAAAAGCTACGATCAAGAAGAAAAGGAGGACCAGAGAATGCATTATGCAATTACAAAGGAGTTAGGCAAAGGACTTGGGGAAAATGGGTTGCTGAAATAAGAGAACCCAAACGTGGCACTAGGCTTTGGCTAGGAACATTCAACACCTCTATTGAAGCAGCACTTGCCTATGACAATGCTTCAAAAAGGTTATATGGCGAATCTGCTAGGCTCAATTTGGCACCATCACAATCCTCTACAACAACAAGTATAGGGATTGATCCTACACAATCTACAGCTCCTAAATGCATTGAAGAAAATTCTAATAATAATAATAATAATAAGGGTGTGTTAGTGGAGACTAATTTGGACCTTGAGTTACAAAGTCTTCCATGGAATACTAGTGACTTTGTCATGGATGATTTTATGGAACTTAATGATACATTACTGGCTCAAGGGCTTAAGGATTGGGATCCATCATCGTTACTAGAGATTTAA 495 0.3798 MMKKESKKLRSRRKGGPENALCNYKGVRQRTWGKWVAEIREPKRGTRLWLGTFNTSIEAALAYDNASKRLYGESARLNLAPSQSSTTTSIGIDPTQSTAPKCIEENSNNNNNNKGVLVETNLDLELQSLPWNTSDFVMDDFMELNDTLLAQGLKDWDPSSLLEI* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2811 164 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Mtr1g2811 164 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Mtr1g2811 164 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Mtr1g2811 164 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
Mtr1g2811 164 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 3 159 - -
Mtr1g2811 164 MobiDBLite consensus disorder prediction 1 21 - -
Mtr1g2811 164 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Mtr1g2811 164 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677
Mtr1g2811 164 CDD AP2 22 82 IPR001471 GO:0003700|GO:0006355
Mtr1g2811 164 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 159 - -
Mtr1g2811 164 Gene3D AP2/ERF domain 23 80 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2811 Mtr-Chr1 39266413 39267129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2811 6 80 AP2-EREBP Transcription Factor Family AT5G18450 73.333 1.32e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g2811 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2811 - - mtr:MTR_1g079630 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2811 1 39266413 39267129 Mtr1g2811 1 39266413 39267129 ECH