Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2800 ATGGCAAACAATGAAGAACAGAAACATGCATTGAAGGACAAGTTGAAGGAACTTGTGAATACTATAGTGGAAGGTGATGACTTCACTGTGCATGCTGCTGATGAAGCTATCACTGCTCTTTCTGTTCTTAGGGATATGAAATGCAGTGCTTCTTTCTCTCGTAAATTCGATCATTTATCTCTTCCTGTTCCTCCACAGTTTCGTTGCCCCATCTCAGGTCTCATTATGACTGATCCTGTTATCTTGGCCATAGGACAGACTTATGATCGACCGTTCATCCAGAGGTGGCTGAATGAAGTCCACAAAGCTTGCCCTCAGGCGCAGCGTGTCCTCTCTCATTCCATCCTTTCCCCTAATTATTTGGTCTATGACATGATTTCAAGGTGGTGTAAGGAGCATGGAATTGAGCTGCCAATGCCTGTTGGGGACATTGACAATGGAGAAGTAACTGAAGCACACAAATACCGTTTACGTTCGTTGCTTCACAAACTGTCCTTATCTGCATTGGATCAAAAAGAGGCAACAAGAGAGCTTCGGCTGTTAACAAAGAGAATGCCATCGTTTCGAAGACTCTTCGGTGACTCGGAAGTGATTCAGAATTTGCTCAGTCCGTTATCACCCGGCTTGGCTTGTATTGATCCTGAACTCCATGAGGACCTGATTACAGCTGTTCTAAATCTCTCATTTGATGAAAGCAACAAGAGAGCTTTTGTAGAGGATGAAAAGCTTATCACCTTTATTATTGATTCCTTGAAATCAGGAACCATACAAACAAGAAGCAATGCTGCTGCAGCTATTTTGTCATTATCAGCTCTTGATATCAACAAACACATTATTGGAAAAACTGATGCAATTAAAAATTTGGTTGATCTTTTAGAAAAGGGGCATCCATCATCAATGAAAGATGCTCTTTCGGCTATATTCAATCTCTGTATTGCACATGAAAATAAAGCGAGGACTGTTCGAGAAGGTGCAGTTCAGGTTATTCTCAGCAAGATCATCATGGACCGTGTTCTAGTTGATGAGTTTTTGTCTCTATTGGCACTTCTCTCCAGCCATTCAAAGGCTGTTGCAGCATTGGGAAGTCACGGCGCTGTCCCTTTCTTTATGGGTATTTTAAGGGATAACAGCATTTCGGATCGGAGCAAGGAAAACTGCGTTGCAATCTTGTACATCATATTTTTCAATGATAAAACAAAGAGGAAGGAAATAAAAGAAGATGAAATAGCCAATGGTACATTGTCTAAGCTTGCACAGTGTGGAACTTCAAGAGCTAAGAGGAAAGCTTCTGGTATTCTTGATAGGCTCAACATAGTTCAATCCTCAAAGCACATTACTTGA 1341 0.4131 MANNEEQKHALKDKLKELVNTIVEGDDFTVHAADEAITALSVLRDMKCSASFSRKFDHLSLPVPPQFRCPISGLIMTDPVILAIGQTYDRPFIQRWLNEVHKACPQAQRVLSHSILSPNYLVYDMISRWCKEHGIELPMPVGDIDNGEVTEAHKYRLRSLLHKLSLSALDQKEATRELRLLTKRMPSFRRLFGDSEVIQNLLSPLSPGLACIDPELHEDLITAVLNLSFDESNKRAFVEDEKLITFIIDSLKSGTIQTRSNAAAAILSLSALDINKHIIGKTDAIKNLVDLLEKGHPSSMKDALSAIFNLCIAHENKARTVREGAVQVILSKIIMDRVLVDEFLSLLALLSSHSKAVAALGSHGAVPFFMGILRDNSISDRSKENCVAILYIIFFNDKTKRKEIKEDEIANGTLSKLAQCGTSRAKRKASGILDRLNIVQSSKHIT* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2800 446 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 439 - -
Mtr1g2800 446 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Mtr1g2800 446 CDD RING-Ubox_PUB 67 105 IPR045210 -
Mtr1g2800 446 SUPERFAMILY RING/U-box 51 137 - -
Mtr1g2800 446 Coils Coil 1 21 - -
Mtr1g2800 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 136 IPR013083 -
Mtr1g2800 446 PANTHER U BOX DOMAIN-CONTAINING 6 439 - -
Mtr1g2800 446 SUPERFAMILY ARM repeat 168 436 IPR016024 -
Mtr1g2800 446 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Mtr1g2800 446 Pfam U-box domain 63 133 IPR003613 GO:0004842|GO:0016567
Mtr1g2800 446 Gene3D - 158 443 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2800 Mtr-Chr1 39172120 39174488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2800 125 444 U-box Gene Family AT3G07360 49.695 1.25e-91 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2800 - - gmx:100806132 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2800 1 39172120 39174488 Mtr1g2800 1 39172120 39174488 ECH