Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2764 ATGAGGTCATTGATGGGGACCGAGCTTATGAGGATATGTGTTAAAGAAGATGATGATTTTCCGTCAGTTCCACCGGGTTTTGAGTCATATACATCTTTCGCACTGAAGAGGGTAGAAGAGAATGAGAAAAACAATGATAAAAATCCGACGAGTTCCTCGACGACGACAAGTGCATCTGAATCACAGTCAACTCAGGTCGGAAATGGCGTGCAATTGAGTGATAGTGCAAAGGTTTCTAGATCCCTTCGACGAAGAAGATGGATTAACCATGGAAAGTGCGAGAGCAGTTCAGAGGAAGACGCTGATTGTGAGCGGCATGATCAAAATTTCTCCTCAAGGCCTTGTCTTCCTAAAGGAGTCCTCAGAGGATGTCCAGATTGCCGTAATTGCCAAAAGGTCATTGCTAGATGGCGACCAGAAGTTGCTCGTAGACCACAGATTGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGAATTTCAAGATACTTTGAAATATATATCAAAGATTCGCTCCAGAGCTGAACCATATGGAATCTGCCGTATTGTTCCCCCACGTTCATGGAAACCCCCTTGTCCTCTCAAGGAAAAAAGTATATGGGAGGGTTCTAAATTCGCTACTCGTGTTCAGAGGATTGACAAACTTCAGAATCGTAATTCAGGGACAAAGAAGTCAAGGATTCAAAATAATATGAAAAGGAAAAGGAGAAGATGCACAAGAATGGGAGTGGATAATGGCACTGGAACAGAACCTAATGCAGGATTTTGTGAAGTTGAAACATTTGGGTTTGAACCTGGCCCAGAATTTACCTTGGAAACATTTAAGAGATATGCAGACGAGTTTAAGGCCGAATACTTCAAAAATGATAATTTATCTCATCCAAGTGCTAATACAACAATTTTAAATGGTACCTCAGAGCCTTCTGTGGAGAACATTGAGGGTGAATACTGGCGGATGGTTGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGAGTTTTGGGAGTGGTTTTCCTAGCAAGTCTAGTCAAGTTTCTGTTTCATACGAGCAGTACATAAAATCTGGGTGGAATTTAAATAACTTTGCAAGGTTACCTGGATCTCTGCTCTCTTATGAAACCAGTGATATATCTGGTGTTGTAGTGCCATGGTTGTATATAGGAATGTGCTTTTCCTCATTTTGTTGGCATGTGGAAGATCACCATTTATATTCATTGAATTATATGCATCTGGGTGCTCAAAAAATGTGGTATGGTGTCCCTGCAAAAGATGCATGCAAATTGGAAGAGGCCATGAGAAAGCAGTTACCTGAGCTTTTTGAAGAACAACCTGACTTGCTTCATAAGCTGGTCACGCAGCTTTCTCCTTCTATTCTTAAGTCCAAAGGTGTGCCAGTTTATAGGTGTGTTCAAAACCCTGGGGACTTTATTCTAACATTTCCTCGAGCCTACCATTCTGGGTTCAATTGTGGCTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCCGTTGACTGGCTTCCACATGGACATATTGCTATAGAGCTGTACCGGGAGCAGGGGCGTAAGACTTCTGTATCTCATGATAAGCTATTGCTTGGGGCTGCTAGGGAAGCAGTACGAGCCCAGTGGGAGATTACTTTGCTGAAGAAAAACACTTCAGATAATCTAAAATGGAAAGATGTTTGTGGAAAAGACGGTCTTTTGGCAAAAGCATTCAAGGCACGTGTTGAGATGGAGCGGGTAAGAAGGGAATTTCTCTGCAGTTCTTCAAAGGCATTAAAAATGGAGAGTAGTTTTGATGCTACCAGTGAAAGGGAATGCAGCTTCTGTTTTTTTGATTTACACCTATCTGCTGCTGCCTGTCACTGTTCCACAGATAGATATGCTTGCTTGGATCATGCTAAGCAATTGTGTTCATGCTCTTGGAGCTCCAAATTTTTCCTATTTCGTTATGATATTAGTGAACTAAATATTCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCAAAATTAGACCTTGGGCTGGCCCTGACTTCTTATATCTCAGCAGATAAAAAAACAGTATGTCAGGAATTGAAATTGCATTCATCCGACTCGTCTTATTCTTCCAGGAGCAATGTGAATAATGAGGCGGCTTTGACAGATGTTCCAATAGTGGATCAAGCAAATTCTGCAAATAGCAAGGATCAGAGCTATCTTAAACAGAAGAATAGCTTCAAACCTACATGTGAGATGGCTAATCGTAAGATCTTTGCTATTAAAGGAGAGTCTATCATTTGTAGATCAAAGCCGAGTGTCCCTGTTTGTGAATTCAATCAAGAGGATTCCTCGTATGCTTTATCTCCGCCGCTAGCTCAACATGGAGATGAGAAAAGTACACATTCAAGACCTAAAGATATCATACTTCTTAGTGACGACGAAGATGATGAAATGAAGATGTCAGATTCAAATAGAAGGAAGGAGGTTCCTCATATGCTTGCTGGTTCTAGAAACAAAGCAAGCCTGTGTAGTGATATAGAAGATAAAAGCTTGACCATCCCTGTGACAGATGCTTCTGTGACAGGTGAGAAGGATGCTATTGCGGTGCTTCGTGAAGATTCAGGCTCAAATTCAACTCAGCTTTTACAAGTAAAACAAGAATGTCATGAGCAGAGAAGACCAATTATACCTTCTACCCCAGTAGATCTTTCTTTTCATATAGGTCTTACTGGTGCAGAATCAGCTAGGAACATTCCAGCTTCTACAAGAGTGGATGCCAGCGGTCATAGTTTAGAACGTTTGGAGGTTTGTCCTTCAAACCCCCAACCTTCCAGCACTATTAAGGCTAAGAACGAGGATAATCATGAGAAGTTTGATGGATGTTCCACTTCTAATGTAGCAGACAGTGCAAGAGCTGTTAACGGAAACATCTCTTGTGGTCCAAACAATTCCCGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTCCGGCGCATCAACTGCAATGTTGAGCCTTTGGAATTTGGAGTCGTGCTTTCTGGAAAGTCATGGTGCAGCATTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTCGATACATAAATATCTTAGATCCATGCAGTACATGTTACTATATTTCAGAAATTCTTGATGCTGGACGTGGTTCGCCTCTATTTATGGTTTCCTTGGAAAATAATCCAAGGGAGGTCTTCATTCATATGTCAGCAACAAAATGCTGGGATATGGTAAGAGAGAGAGTGAATCTAGAGATAGCAAAACAGTTTAAGCTGGGAAGAAAGGGCCTTCCTCCTTTACATCCTGCTGGCAGCCTTGATGGCTTTGAAATGTTTGGATTTTCTTCACCAGAAATAGTGAAGGCTATTGAGGCGCTAGATCGAAGTCGAGTTTGTCATGAATACTGGGACTTCCGTCGGCCTCAAGGGCAGCTTTCACAAGCTGGCCAGACCACTGTAAATGGTGGAGGTGGAAGTGATCAAGGGGTTCCCATGAATCAGCACACACCCACCGGAGCTGTTGCAGTACTGAAGAGCCTATTTAAAAAGGCGAATGTGGAAGAATTGAACTCATTGTACAACATTCTTACTGACAATAAGCCAGCGGCTGAACAGATCCCAATTGCAAAAATTCTCTATGAAGAAATTCACAAAACCCAACCACCCTAG 3696 0.4215 MRSLMGTELMRICVKEDDDFPSVPPGFESYTSFALKRVEENEKNNDKNPTSSSTTTSASESQSTQVGNGVQLSDSAKVSRSLRRRRWINHGKCESSSEEDADCERHDQNFSSRPCLPKGVLRGCPDCRNCQKVIARWRPEVARRPQIEDAPVFYPTEEEFQDTLKYISKIRSRAEPYGICRIVPPRSWKPPCPLKEKSIWEGSKFATRVQRIDKLQNRNSGTKKSRIQNNMKRKRRRCTRMGVDNGTGTEPNAGFCEVETFGFEPGPEFTLETFKRYADEFKAEYFKNDNLSHPSANTTILNGTSEPSVENIEGEYWRMVESPTEEIEVLYGADLETGSFGSGFPSKSSQVSVSYEQYIKSGWNLNNFARLPGSLLSYETSDISGVVVPWLYIGMCFSSFCWHVEDHHLYSLNYMHLGAQKMWYGVPAKDACKLEEAMRKQLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFILTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYREQGRKTSVSHDKLLLGAAREAVRAQWEITLLKKNTSDNLKWKDVCGKDGLLAKAFKARVEMERVRREFLCSSSKALKMESSFDATSERECSFCFFDLHLSAAACHCSTDRYACLDHAKQLCSCSWSSKFFLFRYDISELNILVEALEGKLSAVYRWAKLDLGLALTSYISADKKTVCQELKLHSSDSSYSSRSNVNNEAALTDVPIVDQANSANSKDQSYLKQKNSFKPTCEMANRKIFAIKGESIICRSKPSVPVCEFNQEDSSYALSPPLAQHGDEKSTHSRPKDIILLSDDEDDEMKMSDSNRRKEVPHMLAGSRNKASLCSDIEDKSLTIPVTDASVTGEKDAIAVLREDSGSNSTQLLQVKQECHEQRRPIIPSTPVDLSFHIGLTGAESARNIPASTRVDASGHSLERLEVCPSNPQPSSTIKAKNEDNHEKFDGCSTSNVADSARAVNGNISCGPNNSRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSIQAIFPKGFRSRVRYINILDPCSTCYYISEILDAGRGSPLFMVSLENNPREVFIHMSATKCWDMVRERVNLEIAKQFKLGRKGLPPLHPAGSLDGFEMFGFSSPEIVKAIEALDRSRVCHEYWDFRRPQGQLSQAGQTTVNGGGGSDQGVPMNQHTPTGAVAVLKSLFKKANVEELNSLYNILTDNKPAAEQIPIAKILYEEIHKTQPP* 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2764 1231 SUPERFAMILY Clavaminate synthase-like 358 550 - -
Mtr1g2764 1231 ProSiteProfiles JmjC domain profile. 360 523 IPR003347 -
Mtr1g2764 1231 Pfam JmjC domain, hydroxylase 390 506 IPR003347 -
Mtr1g2764 1231 Gene3D Cupin 135 507 - -
Mtr1g2764 1231 PANTHER LYSINE-SPECIFIC DEMETHYLASE 73 706 - -
Mtr1g2764 1231 PANTHER LYSINE-SPECIFIC DEMETHYLASE 981 1228 - -
Mtr1g2764 1231 SMART fyrn_3 1012 1056 IPR003888 GO:0005634
Mtr1g2764 1231 SMART JmjN_1 149 190 IPR003349 -
Mtr1g2764 1231 SMART cupin_9 360 523 IPR003347 -
Mtr1g2764 1231 Gene3D - 1005 1142 - -
Mtr1g2764 1231 MobiDBLite consensus disorder prediction 47 77 - -
Mtr1g2764 1231 SMART fyrc_3 1062 1153 IPR003889 GO:0005634
Mtr1g2764 1231 Pfam F/Y rich C-terminus 1061 1148 IPR003889 GO:0005634
Mtr1g2764 1231 MobiDBLite consensus disorder prediction 1155 1177 - -
Mtr1g2764 1231 PANTHER JUMONJI 14-RELATED 981 1228 - -
Mtr1g2764 1231 PANTHER JUMONJI 14-RELATED 73 706 - -
Mtr1g2764 1231 MobiDBLite consensus disorder prediction 1155 1178 - -
Mtr1g2764 1231 Pfam F/Y-rich N-terminus 1011 1053 IPR003888 GO:0005634
Mtr1g2764 1231 MobiDBLite consensus disorder prediction 38 77 - -
Mtr1g2764 1231 Pfam C5HC2 zinc finger 613 663 IPR004198 -
Mtr1g2764 1231 ProSiteProfiles FYR domain FYRC motif profile. 1058 1149 IPR003889 GO:0005634
Mtr1g2764 1231 ProSiteProfiles JmjN domain profile. 150 191 IPR003349 -
Mtr1g2764 1231 ProSiteProfiles FYR domain FYRN motif profile. 998 1056 IPR003888 GO:0005634
Mtr1g2764 1231 Pfam jmjN domain 151 184 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2764 Mtr-Chr1 38796783 38807141 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2764 5 1226 JUMONJI Transcription Factor Family AT1G08620 54.864 0.0 1229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mtr1g2764 JmjC 2.6e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2764 - - gmx:100800271 1897.09