Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2747 ATGGAAGCATCTCATGAACAACAACTCTCATTAGGCTCTAGAGAACAACAATCTCCTATCCCTTTCTCCATCAATATTGCTTATTCTTCTACAGAAGGAGGAACAAGAGAAAGTGCACGTTACAATGTGTATGCATGCAAAACATGCAAAAAAACTTTCACTTCATTTCAAGCACTTGGAGGCCATAGAAAAGTTCACAAGAAGCCTAGATATGATCGTCAGGTTCAAGAGTTTCAATTCAAAACCAATAATAAATCAATTTCCCTTAAATTGAATAGTATAAATGGTATGGGAAATATATATGCTAGCAGCAGCAGCAGCAGCAATAACACCAGCACCACCACCACTACCAACAACAACAGCAACACCAACAACAACAAAACCAAGGTTTATGGGTGCTCCATTTGTGGTTCTAAATTCACATCTGGCCAGGCACTTGGTGGCCATATGACCTTCCACCATGCACCTGTGGAGACAACCTCATCGACACCAATGGCTTTGCAACCAGACGAAGAAGATGAAGAACCACCTAGAAAGAAAATGAATGTCTCTTTGGATTTGGATCTCAACCTTCCTGCAGCTTAA 585 0.4068 MEASHEQQLSLGSREQQSPIPFSINIAYSSTEGGTRESARYNVYACKTCKKTFTSFQALGGHRKVHKKPRYDRQVQEFQFKTNNKSISLKLNSINGMGNIYASSSSSSNNTSTTTTTNNNSNTNNNKTKVYGCSICGSKFTSGQALGGHMTFHHAPVETTSSTPMALQPDEEDEEPPRKKMNVSLDLDLNLPAA* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2747 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Mtr1g2747 194 PANTHER ZINC FINGER PROTEIN ZAT5 38 193 - -
Mtr1g2747 194 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Mtr1g2747 194 Gene3D Classic Zinc Finger 103 184 - -
Mtr1g2747 194 Gene3D Classic Zinc Finger 24 95 - -
Mtr1g2747 194 Pfam C2H2-type zinc finger 43 69 - -
Mtr1g2747 194 Pfam C2H2-type zinc finger 130 156 - -
Mtr1g2747 194 MobiDBLite consensus disorder prediction 155 194 - -
Mtr1g2747 194 ProSitePatterns Zinc finger C2H2 type domain signature. 133 154 IPR013087 -
Mtr1g2747 194 SUPERFAMILY beta-beta-alpha zinc fingers 43 153 IPR036236 -
Mtr1g2747 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
Mtr1g2747 194 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 38 193 - -
Mtr1g2747 194 SMART c2h2final6 131 154 IPR013087 -
Mtr1g2747 194 SMART c2h2final6 44 66 IPR013087 -
Mtr1g2747 194 MobiDBLite consensus disorder prediction 103 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2747 Mtr-Chr1 38590191 38590775 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2747 29 193 C2H2 Transcription Factor Family AT5G04390 41.538 1.88e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g2747 zf-C2H2_6 1.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2747 - - mtr:MTR_1g077730 347.821