Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2746 ATGGAAGCATCTCATGAACAACAACTCTCTTTAGGCTATAGAGAACACATCAATATCACCGAAGGGAATATAACTCAAAAGGTTATAAACCCATCGCAATCTCCTAACCCTTCCTCCACAAGTGCTTATTCTTCTACTAGAGAAGGAGAAACAAGAGAAAGTGCACGTTACAATGTGTATGCATGCAAAACATGCAACAAAACATTCACTTCATCTCAAGCACTTGGAGGCCATAGAAAAGGTTGTCAGAAAAAGCCTAGAGATGGATTCAAAATCAACAATAAATCAATTTCCCTTAAATTGAATAGTATAAATGGCATGGGAAATATATATGCTAGCAGCAGCAGCAGCAACAAATCCAAGGTTTATGGGTGCTCCATTTGTGGTTCTAAATTCACATCTGGCCAGGCACTTGGTGGCCATATGACCTTCCACCATGCACCGGTGGAGGAAACCTCATCGACACCAATGGCTTCGGAACCAGACGAAGAAGATGAAGAACCACCTGCAAAGAAAATGAATGTCCCTTTGGATTTGGATCTCAACCTTCCTGCAGCTTAA 561 0.4135 MEASHEQQLSLGYREHINITEGNITQKVINPSQSPNPSSTSAYSSTREGETRESARYNVYACKTCNKTFTSSQALGGHRKGCQKKPRDGFKINNKSISLKLNSINGMGNIYASSSSSNKSKVYGCSICGSKFTSGQALGGHMTFHHAPVEETSSTPMASEPDEEDEEPPAKKMNVPLDLDLNLPAA* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2746 186 Pfam C2H2-type zinc finger 122 148 - -
Mtr1g2746 186 Pfam C2H2-type zinc finger 59 80 - -
Mtr1g2746 186 MobiDBLite consensus disorder prediction 26 48 - -
Mtr1g2746 186 SMART c2h2final6 123 146 IPR013087 -
Mtr1g2746 186 SMART c2h2final6 60 80 IPR013087 -
Mtr1g2746 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 150 IPR013087 -
Mtr1g2746 186 MobiDBLite consensus disorder prediction 149 186 - -
Mtr1g2746 186 ProSitePatterns Zinc finger C2H2 type domain signature. 125 146 IPR013087 -
Mtr1g2746 186 Gene3D Classic Zinc Finger 102 176 - -
Mtr1g2746 186 Gene3D Classic Zinc Finger 57 84 - -
Mtr1g2746 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 88 IPR013087 -
Mtr1g2746 186 PANTHER ZINC FINGER PROTEIN ZAT5 42 185 - -
Mtr1g2746 186 SUPERFAMILY beta-beta-alpha zinc fingers 59 145 IPR036236 -
Mtr1g2746 186 MobiDBLite consensus disorder prediction 26 50 - -
Mtr1g2746 186 PANTHER ZINC FINGER PROTEIN ZAT5 42 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2746 Mtr-Chr1 38586519 38587079 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2746 53 185 C2H2 Transcription Factor Family AT2G28200 37.126 8.84e-22 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g2746 zf-C2H2_6 1.4e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2746 - - mtr:MTR_1g077730 231.876