LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g2743	ATGGAAATGGCAATGTCTTTTAGTTTAAGGAATAAGCTTAAGACTCTTTGTGCTTACGGGGATGGTTGGTCTTATGCCATTTTCTGGCGCTTTCATCAAAGGAATCCTATGTTGTTGAATGTGGAAGAAACATACTATGAAGAGCAATTGGGAGAAGAGATTACAAAAATAGTTCCACAAGTGCATTTGCTGGGTGAAGGTATTGTTGGTGAAGCTGCTTTCACAGGGAAGCATAGTTGGTTGCATTCAGTTAGTTCTGAGGATGATTCTGGATTGTATCAACAATTATCTTCTGGGATAATTAAGACAATTGTAGCCATACCTGTCAATGCATGTGGAGTGGTACTGTTTGGATCCAGAAATAAGATTTTGGAGACAACAGATTTTTTGGATCAAACACAAAGTTTACTCAAGGAGATAAACGGTATTGACATGATAGACGGGTCAGGAAATGAAGTTTTATCGATGGATTTTACAAATGATGATCTCAACGGGTTGCTAGCTTCCATTTCCTCTAAAAATTCATGTGATTGGAATCTAAAATATGCTCATGAAGAAAACCATAAAGATCTGAGAGAAGTTTTTTCTTCGTTTGAAGAAGGAATAACTTCAGTAGAATTTGATTCTTCATCTTTTAATGACCAATTCAAAGATACCATAGAAGCTTTTTTGCAGCCTAACTCTTCTATGAACAACTTGATTTCCAAAAGTACCTCTCTTTTTGGTGAAAAATCTTGTTTTGAGTCATTGGAGCAACAATTTGTATCTGAAATAATGGCACAGGAAGTTGCAGATGTTTCAACTTCATTTGCTAGCAGCATAGTTCAAGATACAGAATTGACTTCATTGCAAAATATGGACAGAGTTTCATTTCAAGACAAACATTCTTCTCAATCTGATGTTGTGATTGAAGTTGATTTACCATCAAGTTCAAAAACACTACTACAAGGAATCTCTAATACCTTAGAGCTGGTCGATATGTCCGAAGAATTTTTGAAGTTCAGTTCCATGGATGATCTTTGCCAATGGTTTGCTCCTTCATCAGAGGATACTAGTATCTGCAGAAAAATGATTCAATTGGATAATACCCTTTCTGAATCAATAGAGTTTAATCCTGATTGCACTGATCTAGGACTAGCTGAGAAAGAAACATCTGTAGTAATACATAATTCTGAGAATGGTTTCTTGGATAGCACGGAATTTGATCTGGGATGCGATCAAGGTAGTGAATGGTGGGGGAATTTACTTACACCAGTGGTGAGTGCTGATACTGATAATACTGGCTTTTCTGAATGCATATCAGAGTTGAATACCGGTACACCGACTGATAATACTCGGAAGAGGTTATTCTCAGAGTTAGGAATTGAAGAGCTTTTGAGAGGTGAAGCAATTTACAACAATCCTTTTAATAGTTCTAATTTTGAAAATGAGCTGTTATCATCTAATAAAAAGCAGATGGTAGAACTTTCTCCCTTGAATCAAACTCAAGTACATTTTGCAAACCTTGATGGAACTGAAACTAGACCAAACTTGATGCATTCTGTTTCTGACTTGGACAAGTCCAATAGTGTTATAACAAGGAAAGATACACTCCCAAAATTACAAGTAGGTATGTTGGTTAATGATAGAAATAGCATCAACCTTAAGAGGGCTGTTCCGGTACACCCTAGAAAACTGGACGAGCCCGCAAAGCCCAACAAGAAGAAGGCTAAGCCGGGGGAGAGCACTCGGCCACGACCAAAAGATCGGCAGCAGATTCAAGACTGTCTTAAAGAGTTGCGTGGCATCATCCCTCATGGTGGAAAGTGTAGCATCGATTCTTTGTTAGACCGCACCATCAGATACATGCTTTTCTTACGCGGTGTCATCAAATATGCAGACATACTACAAGAGCCTAATGAGACAAAGCTTATTGAGCAAGCAAATGAAGTGGTTCCAAAAGACAGCAATGTGGCACATAACAAAAACCATGGTGCTACATGGGCATATGAAGTAAAAAACCAAACAATGGTATGTCCAATTATAGTCGAGGACATGAAATCACCTGGCCAAATGCTTATAGAGATTCTTTGTGAAGATCAAGGTTTCTTCCTTGAGATAGTCGACATAATTCGAGGTTTCGGGCTGAATATCTTAAAAGCAAAGATGGAAACAAGGAAGAAAAAACTATGGGCACACTTTATTGTTGAGGCAAATAGACATGTGACGAGGATAGATGTGTTTTGGTCACTTATCAATCTTCTTCAACAACCAAACACCGCCGCAATCGATTCTTCTAATAAGCATTGCAACACTATTAATTAA	2304	0.3789	MEMAMSFSLRNKLKTLCAYGDGWSYAIFWRFHQRNPMLLNVEETYYEEQLGEEITKIVPQVHLLGEGIVGEAAFTGKHSWLHSVSSEDDSGLYQQLSSGIIKTIVAIPVNACGVVLFGSRNKILETTDFLDQTQSLLKEINGIDMIDGSGNEVLSMDFTNDDLNGLLASISSKNSCDWNLKYAHEENHKDLREVFSSFEEGITSVEFDSSSFNDQFKDTIEAFLQPNSSMNNLISKSTSLFGEKSCFESLEQQFVSEIMAQEVADVSTSFASSIVQDTELTSLQNMDRVSFQDKHSSQSDVVIEVDLPSSSKTLLQGISNTLELVDMSEEFLKFSSMDDLCQWFAPSSEDTSICRKMIQLDNTLSESIEFNPDCTDLGLAEKETSVVIHNSENGFLDSTEFDLGCDQGSEWWGNLLTPVVSADTDNTGFSECISELNTGTPTDNTRKRLFSELGIEELLRGEAIYNNPFNSSNFENELLSSNKKQMVELSPLNQTQVHFANLDGTETRPNLMHSVSDLDKSNSVITRKDTLPKLQVGMLVNDRNSINLKRAVPVHPRKLDEPAKPNKKKAKPGESTRPRPKDRQQIQDCLKELRGIIPHGGKCSIDSLLDRTIRYMLFLRGVIKYADILQEPNETKLIEQANEVVPKDSNVAHNKNHGATWAYEVKNQTMVCPIIVEDMKSPGQMLIEILCEDQGFFLEIVDIIRGFGLNILKAKMETRKKKLWAHFIVEANRHVTRIDVFWSLINLLQQPNTAAIDSSNKHCNTIN*	768

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g2743	767	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-LIKE PROTEIN-RELATED	5	767	-	-
	Mtr1g2743	767	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	583	625	IPR036638	GO:0046983
	Mtr1g2743	767	MobiDBLite	consensus disorder prediction	553	585	-	-
	Mtr1g2743	767	MobiDBLite	consensus disorder prediction	550	585	-	-
	Mtr1g2743	767	CDD	ACT_UUR-ACR-like	686	729	-	-
	Mtr1g2743	767	PANTHER	TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED	5	767	IPR043561	GO:0003700\|GO:0006355
	Mtr1g2743	767	Pfam	bHLH-MYC and R2R3-MYB transcription factors N-terminal	53	136	IPR025610	-
	Mtr1g2743	767	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	570	619	IPR011598	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g2743	Mtr-Chr1	38547914	38552784	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr1g2743	556	750	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT2G27230	52.261	3.90e-60	213

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g2743	-		-	cam:101509177	1039.64

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