Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2729 ATGATTAGGAAGAAGGTGAAACTTGCCTTTATCTTGAATGATTCGGCAAGAAAGAGAACCTACAACAAGAGAAAGAAGGGTATCATTAAGAAGGTGAGAGAGCTCACTACTCTTTGTGATATTCCAGCCTGTGCTATAATTTCCAATCCGTTTGATTCTACAACAGAGGTATGGCCAAATATGGAGGGAGCTATACAGGTGATTGAGAGGTACCAAAATGCATATATCAAACACAAGAAAAATAATGTGGACCAAGAAAGTTTTCTTTTGCAACAGATTACTAAAACCAGGGAACAACTAGAAAAGCAAAGAGAACAGAATAATGAGAATGAGCTGGACATTCATATGGTTAGGCACTTGCAAAACCAAGAGTTGCCTGATGATTTGACTGTTACAGATTTAAGAGATTATGATAAGCTAATTGAGAAAAAGATGAAGGAGATTGATGACAAGATTGTTGCACTCAGTTTATGA 474 0.3671 MIRKKVKLAFILNDSARKRTYNKRKKGIIKKVRELTTLCDIPACAIISNPFDSTTEVWPNMEGAIQVIERYQNAYIKHKKNNVDQESFLLQQITKTREQLEKQREQNNENELDIHMVRHLQNQELPDDLTVTDLRDYDKLIEKKMKEIDDKIVALSL* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2729 157 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Mtr1g2729 157 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
Mtr1g2729 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr1g2729 157 Coils Coil 86 113 - -
Mtr1g2729 157 PANTHER MADS BOX PROTEIN 2 154 - -
Mtr1g2729 157 CDD MADS_SRF_like 3 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr1g2729 157 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Mtr1g2729 157 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Mtr1g2729 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr1g2729 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr1g2729 157 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr1g2729 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2729 Mtr-Chr1 38387127 38387600 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2729 1 152 Type I MADS-box Gene Family AT5G48670 45.455 3.66e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr1g2729 SRF-TF 2.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2729 - - gmx:100792290 162.54