Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2726 ATGACTAGGAAGAAGGTGAAACTCGCCTTTATGTCCAATGATTCAGCAAGAAAGGCTTCCTACAAGAAGAGGAAGAAAAGTATCATCAAGAAGGTGAGAGAACTCACCATTCTTTGTGGTATTCCAGCATGTGCTATAATTTCCGATCCTTTTGATTCTAAAACAGAGGTGTGGCCAAATCTGAAGGAAGCCAAACAGGTGATTGAGAGGTATCAGAACTCATATATGAAAGATGAGAGAAAAAATGTGAACCAGGAAAGTTTCCTTTTGCAACAGATTGCTAAAGCTAGGGACCAACTGAGAAAGCAAAGACAAGACAATCGTGAGAATGAGCTGAACATTCGTATGATTTGGTACCTGCAAAACAACACGGTGCCAGATGATATGACTGTTTCTGATTTGAGAGACTTGGATAAGTTAATTACAAAAAATATGAAAGAAATTGATGACAAGATGGCTTCACTTAGTTTATCAAACTGA 480 0.3812 MTRKKVKLAFMSNDSARKASYKKRKKSIIKKVRELTILCGIPACAIISDPFDSKTEVWPNLKEAKQVIERYQNSYMKDERKNVNQESFLLQQIAKARDQLRKQRQDNRENELNIRMIWYLQNNTVPDDMTVSDLRDLDKLITKNMKEIDDKMASLSLSN* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2726 159 Coils Coil 61 81 - -
Mtr1g2726 159 Coils Coil 90 113 - -
Mtr1g2726 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr1g2726 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr1g2726 159 PANTHER MADS BOX PROTEIN 2 155 - -
Mtr1g2726 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr1g2726 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Mtr1g2726 159 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Mtr1g2726 159 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Mtr1g2726 159 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Mtr1g2726 159 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2726 Mtr-Chr1 38365705 38366184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2726 1 155 Type I MADS-box Gene Family AT5G48670 46.154 6.62e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr1g2726 SRF-TF 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2726 - - gmx:100792290 176.792