Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2725 ATGGTTAGGAAGAAGGTGAAGCTTGCTTTTATCTCCAATGCTTCAAGAAGAAAGGAGACGTACAAAAAAAGAAAGAAGGGTATCATCAAGAAGGTGAGGGAACTCACTATTCTTTGTGGTATTCCAGCATGTGCTATAATTTCCGATCCTTTTGATTCTAAAACAGAGGTGTGGCCAAATCTAGATGGAGTCAAACAGGTGCTTGAGAGGTATCAGAAATCATATATGAAAGATGATAAAAAGAATGTGAACCAAGAAACTTTTCTTTTGCAGCAGATTACTAAAGCTAGGGAACAACTGAGAAAGCTGACACAAGACAATCGTGAGAAGGAGCAAAAGATTCGAATGAAAAATTACATGCAAAACATGCCGGATGATTTGACCGTTTCAGATTTGAAAGAACTTGATAAGATAATTGAGAAAAATATGAAGGAATTGGATGAAAAGATTGTCGCACTTAGTTTATCAGATTGA 474 0.3629 MVRKKVKLAFISNASRRKETYKKRKKGIIKKVRELTILCGIPACAIISDPFDSKTEVWPNLDGVKQVLERYQKSYMKDDKKNVNQETFLLQQITKAREQLRKLTQDNREKEQKIRMKNYMQNMPDDLTVSDLKELDKIIEKNMKELDEKIVALSLSD* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2725 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr1g2725 157 PANTHER MADS BOX PROTEIN 2 153 - -
Mtr1g2725 157 Coils Coil 86 113 - -
Mtr1g2725 157 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Mtr1g2725 157 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 153 - -
Mtr1g2725 157 SUPERFAMILY SRF-like 3 92 IPR036879 GO:0003677|GO:0046983
Mtr1g2725 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mtr1g2725 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr1g2725 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr1g2725 157 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Mtr1g2725 157 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2725 Mtr-Chr1 38351434 38351907 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2725 1 146 Type I MADS-box Gene Family AT3G05860 41.611 2.95e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr1g2725 SRF-TF 8.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2725 - - gmx:100792290 173.326