Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2721 ATGGCAACTAGGCTTCAATATGAGAATTCTTGTGAAATTGGAGCTTTCTCAAAACTTACCAATGCGTATTGTTTGACTGCTATTGGAGGTTCTGCAAATTTCTACAGTGCATTTGAGGCTGAACTAGCAGATATTATCCCTGTGGTCAAAACATCCATTGCTAGCACTCGCCTTGTTGGTCTTCTTTCTGTTGGAAACAAGAATGGGCTTTTGTTGCCCCATACCACCACAGACCAAGAGCTTCAACATTTGAGAAACAGTCTACCTGATCATGTACTTGTTCAGCGTATAGAAGAAAAATTGTCTGCTCTGGGAAATTGTATAGCATGCAATGACCATGTTGCCCTTGCACACGCTGATCTCGACAAGGAAACTGAGGAGCTGATTGCTGATGTTCTTGGAGTTGAAGTTTTCAGGCAGACAGTTGGTGGTAATATTCTTTCTGGCAGTTACTGTGCTCTGTCCAACAGAGGTGGTTTGGTCCACCCTCATACTTCTGTTGAAGACTTGGATGAACTCTCTACACTTCTTCAAATTCCGTTGGTTGCAGGGACTGTCAATCGCGGTAGTGAAGTAATAGCATCTGGCATGGTAGTAAATGATTGGACGGCATTTTGTGGCTCAGACACTACAGCAACAGAGCTCTCTGTGATTGACACTGTTTTCAAGCTGAGGCCCAGCCTCAATAATGAGCTAATTTACATATCCTATTATAAATAA 720 0.4264 MATRLQYENSCEIGAFSKLTNAYCLTAIGGSANFYSAFEAELADIIPVVKTSIASTRLVGLLSVGNKNGLLLPHTTTDQELQHLRNSLPDHVLVQRIEEKLSALGNCIACNDHVALAHADLDKETEELIADVLGVEVFRQTVGGNILSGSYCALSNRGGLVHPHTSVEDLDELSTLLQIPLVAGTVNRGSEVIASGMVVNDWTAFCGSDTTATELSVIDTVFKLRPSLNNELIYISYYK* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2721 239 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Mtr1g2721 239 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Mtr1g2721 239 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Mtr1g2721 239 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 226 IPR002769 GO:0042256|GO:0043022
Mtr1g2721 239 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Mtr1g2721 239 SUPERFAMILY Pentein 1 224 - -
Mtr1g2721 239 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 226 - -
Mtr1g2721 239 Hamap Translation initiation factor 6 [eif6]. 1 239 IPR002769 GO:0042256|GO:0043022
Mtr1g2721 239 Gene3D - 1 225 - -
Mtr1g2721 239 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 223 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2721 Mtr-Chr1 38285354 38287851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2721 1 233 Eukaryotic Initiation Factors Gene Family AT3G55620 81.116 1.22e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2721 K03264 - mus:103968570 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1750 6 32185839 32190191 Mtr1g2721 1 38285354 38287851 PCT