Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2716 ATGGAGAAAAAGATAGTAGTGAAATATAAAGAGTGTCTCAAGAACCATGCAGCTACAATTGGTGGCAATGCAATTGATGGATGTGGTGAATTCATGCCAAGTGGAGAAAATGACACACTTGAAGCTCTCAAATGTTGTGCTTGCAATTGCCATAGAAACTTCCACAGAAAAGAAATAGAGTCTGATTTCAATAGCCCTTCTCAACATTATGCTAATCTTTCACTGATTCCTGATCATAACATTAATGCACCTTTCTTGGCTCATTTTTCTCCAAACAACAAAAGTGAATCAACTAGTCCTTCTGATCAGTCTTATTATGAGAAAGATTTTATTAAGGATGTGGAAAATCGAACCGAAAAGATGATACTTAAGAAGAGGTCTAGAACTAAGTTCAGTAAAGAACAGAAGGAGAAGATGTTGTGCTTTGCAGAAAAGGCAGAGTGGAGGATTCAGAAGCTAGAGGAATCTGTGGTGCAGAAGTTTTGTCAAGAGATTGGAATCAAAAGAAGAATCCTCAAAGTGTGGATGCATAATAACAAGAACACTTTTGCCAAGAGAAATCTTTCTACAAGCTAG 576 0.3698 MEKKIVVKYKECLKNHAATIGGNAIDGCGEFMPSGENDTLEALKCCACNCHRNFHRKEIESDFNSPSQHYANLSLIPDHNINAPFLAHFSPNNKSESTSPSDQSYYEKDFIKDVENRTEKMILKKRSRTKFSKEQKEKMLCFAEKAEWRIQKLEESVVQKFCQEIGIKRRILKVWMHNNKNTFAKRNLSTS* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2716 191 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 8 59 IPR006456 -
Mtr1g2716 191 Gene3D - 111 185 - -
Mtr1g2716 191 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 124 181 IPR006455 -
Mtr1g2716 191 Pfam ZF-HD protein dimerisation region 7 59 IPR006456 -
Mtr1g2716 191 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 9 58 IPR006456 -
Mtr1g2716 191 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 2 187 - -
Mtr1g2716 191 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 187 - -
Mtr1g2716 191 SUPERFAMILY Homeodomain-like 121 185 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2716 Mtr-Chr1 38237709 38238599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2716 3 187 ZF-HD Transcription Factor Family AT1G14440 50.246 5.49e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mtr1g2716 ZF-HD_dimer 1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2716 - - gmx:100793926 253.062