Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2714 ATGGTCGTTAGCGGCGGCAAATCCTTAAAACGTATGAAAAGAAGAGTCACCGCCGATTACCACGATTTCTTTTCATTTCCTTCACCATCCCTCGCTGCATCAGAGAGTTTCTCCGGCGGACCTTTTCGTTCTAATGTTCACTCTTTTCTCACCAAGTACGCGCTTCTTCCACCGCCTTCGGCGTTGTTTCCGCACTTGCTGACGTGGCAGATCCTCTTCCGTGTCGGTGAGATCACCGAAGGGGGTGAATCGGGTCCGGCGGTGATTTGCCTTGACGTTGTGGAAGAGGATGTTGCTAGATCCAGATCTGTGTATTGTGATCAGTGCCGAGTTTTCGGTTGCAGCGGAAATCCTGTGTGCAGTAAGCGTTACCATTTTATAATCAAAACTGATGGGAGATCCATTGGTGGATACCATAAACCGTGTATGTGCTGTGGAGATATTTTGCATTTGTCAGAATCCAAGTGCAAGTCATGTAACCATGTGACAACCAGTGATGATGTTGAAGACTGGGTGTACCACCAACTAGAGAACACAAGTCATCTTTTACATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGATCTAGATTTCTTTCTGGTTGCCATATTATGGATTTCTGGGATCGCCTATGCAAGACACTTGGAGCTAGAAAAGTTAGTGTGATGGATGTTTCGAAGAAATATGGGCTAGAGTATCGCTTGCTCCATGCCATTATGAAGGGAAATCCGTGGTATGGTGAGTGGGGATATAATTTTGGCTCTGGTAGCTATTGTCTCACACAGGAAGCATACAAGTCTGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCATCTTCCTCTCCCAGGAACAGAAGCCGCATTCACGTGTGCAGGATATGATTTTGTATTACCGGTCTTTGTCAGAGCATGAGCTTGTAAATATGAGGGACCTATTTTGTTTTTTGATGGGTATGTTACATGATGCTCGCAAGACAGCCTCTAAGTCTGATGACATAACCTGCAAGAAGCGGCGGATCAATGCTTCTGGATTATCAAGTTCTTGGGAAAAGAATGACGTTGAACGTGTGGAGGAAGCCATGCTCAGAGTGCTGCGGGCAGTGTCTGGGTCTAATTGGGTGAGTGGCCGAGCTCTTAGGGGTGCTGTTTGCAAGTTGGCCTGTCCAGAGCTTCTTGATTATTGCCTTGCTGAACTGGGAGGAAAAGTGGTCTATGGTGGGATTGTTAATAGCAGATGCAATCCTCAAACTGGAGTGAATGAATTCAGGATTGATGCTACAAATGTTTTTATGGCCAACCATAATTCTTCAGGCTCAAAGCGCCCTTCTGAAGAGAATCTCCTGCAATGCTTGAGATATTTATACGACTCTCTGCTTCATCCTCGGATGATGCTAAACTATGTTGATGAAGAGACAAGAACTCTTGCAATGAGCTCGGCTCAGAAGCTTCTTGACTGCAAGCAATTAGTAAAAGATTATTGCTCTGAGATGCTGCCAGTGTCTGATTTGTATAAACTACGTATCTCATGTCAGGTTGAATTAGTTGACCAATCTGAAGATACTGAAGCCAAAATTCCACCAGAAATAATTGTGCTGCCCATGAACGCCACGGTGTCTGACCTAAAGATTGAAGCAGCAAAAGCTTTTCAAGAAGTATATCTAATGTTTAGAAAATTTCAAGTTGACGAACTAGTTGGCTACGGCGGTGTAGAAGATTCCACCCAGGTCAAGCAATTGTTGGGATCAAATGAAGTGGTTTGTGTCCGAGGAAAATACTCCGGGAAGAATGGGTTGAGCAAGTTTCGAATGGAACGTGGACTTGAGAGGTGGACTGTCGAGTGCAGCTGTGGTGCTAAGGATGATGATGGAGAGAGAATGATGGCTTGTGATATGTGTGGTGTGTGGCGGCACACTAGGTGTTTTGGCATTCCTGATACTGCTCCTGTTCCAGCCCGTTTTGTTTGTTCGAGATGCCAAAACTGTGACTCAAAGCTTAAATCCGGTGGGCACTGTAAAGATGAGACTGTGGCTAGTGTTACTACAACTAGTGGTAGTTACATGGGAAACAGCTTTTCAGTGCCTTCTAATATTCGTTAA 2124 0.452 MVVSGGKSLKRMKRRVTADYHDFFSFPSPSLAASESFSGGPFRSNVHSFLTKYALLPPPSALFPHLLTWQILFRVGEITEGGESGPAVICLDVVEEDVARSRSVYCDQCRVFGCSGNPVCSKRYHFIIKTDGRSIGGYHKPCMCCGDILHLSESKCKSCNHVTTSDDVEDWVYHQLENTSHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGARKVSVMDVSKKYGLEYRLLHAIMKGNPWYGEWGYNFGSGSYCLTQEAYKSAVESLSNLPLSIFLSQEQKPHSRVQDMILYYRSLSEHELVNMRDLFCFLMGMLHDARKTASKSDDITCKKRRINASGLSSSWEKNDVERVEEAMLRVLRAVSGSNWVSGRALRGAVCKLACPELLDYCLAELGGKVVYGGIVNSRCNPQTGVNEFRIDATNVFMANHNSSGSKRPSEENLLQCLRYLYDSLLHPRMMLNYVDEETRTLAMSSAQKLLDCKQLVKDYCSEMLPVSDLYKLRISCQVELVDQSEDTEAKIPPEIIVLPMNATVSDLKIEAAKAFQEVYLMFRKFQVDELVGYGGVEDSTQVKQLLGSNEVVCVRGKYSGKNGLSKFRMERGLERWTVECSCGAKDDDGERMMACDMCGVWRHTRCFGIPDTAPVPARFVCSRCQNCDSKLKSGGHCKDETVASVTTTSGSYMGNSFSVPSNIR* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2714 707 SMART PHD_3 622 668 IPR001965 -
Mtr1g2714 707 PANTHER OS01G0877500 PROTEIN 1 676 - -
Mtr1g2714 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 676 - -
Mtr1g2714 707 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Mtr1g2714 707 ProSiteProfiles Zinc finger PHD-type profile. 620 670 IPR019787 -
Mtr1g2714 707 CDD PHD_MMD1_like 622 667 - -
Mtr1g2714 707 Pfam PHD-finger 623 670 IPR019787 -
Mtr1g2714 707 SUPERFAMILY FYVE/PHD zinc finger 611 669 IPR011011 -
Mtr1g2714 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 673 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2714 Mtr-Chr1 38220557 38226516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2714 86 674 PHD Transcription Factor Family AT5G22260 30.622 2.55e-85 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr1g2714 PHD 2.6e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2714 - - mtr:MTR_1g076990 1445.25