Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2682 ATGGTAGGATTGGAACTTATACCAATAGGTACAATATTAACTGTGGTAACAAGCCAAGTCTTGAGAACTGCTCATGCAGCAGCTGATGTTCTTATTGGAAAAGAGAGTTTCAAGGCACTTTCGAAATACCTATTTGATATTGAGCCGGTACTCAAGGAACTACAGCTTCAAGAATTGAACGATTCTCAACCTGCTAGAGTTGCTCTAGAGTCCCTTGAAGCAGATGTTAAAAGGGCGAATAATATGGTTGAGAAGTACAAGAACCGCGGCCGTTTCTACTTGCTAGTTAAATGCCGGTCCATAGTCGAGGAAGTTGAGCAAGTTACAAGGGATATTGGAAGGTCTCTGGCTGCACTGTCTATTGCAAATACTGAAGTGCTATCGAGAATTTCTGATCAGGTTGATAGACTACAAGGTGAGATGCAAAGGGTTGAGTTCGAGGCTTCACAGTCTCAGCTTGAAATTGTTGACAAGTTGAACCAAGGACTAAGAGATCAGAAACAGGACCAGGCTTTCGCAAATGACATACTTGAGGAGATTGCAAGGGCAGTTGGCGTGCCGGTGGAACCGTCCGAGATAGGAAAAGAGTTGGCCAGCATTAGGAAGGAAAAAGAAGAAGCTGCAAATAGGAAAGAAAAAGCCGAATTTGTTTTCTTGGAGCAGATCATTAAGTTACTTTCTAGAGCCGATGCAGCAAGGGATTATGAAGAAGTTAAGAATCAATACTTTGAAAGGGTTCAGGTGATAGAGAGATATGATTCAAGGGAAAAATATATCCAACCTCTTAAGTCTTTCCTTTGCCGCATAAACGGAGCTGTTATGGTTGATCCTGTTAGCCTTTCCACTGGCACTACATGTGAGAGATCAGCTATTGAAAGTTGGTTTTATGATGGAAACAGAACAGATCCAGAAACACAAGAGGTTCTTGAAGATACTAGCTTAAGGTCTAACATTCCACTAAGACAATCGATCGAAGAGTGGAGAGAACTCAATTATTGTCTTTTGATAAGGTCTATCCGGGAAAATTTGTCGTTAAATTCTAATCTGAAAGAATCCCTGAGCCAAATGCAGGCTCTAATAGCTGAAAATTCTATTAACAAGGATTGGATCTCTATTGGGGAGGTTACTGATACCGTTATCTCGATCCTTGGGAACTCTAATGACAGAGAAGTGAAGATGAAGATTTTGATCACTTTGAAGGATGTTGTAGAGGGGCATGCAAGAAACAAGGAGAAACTCGCTGAATCTCAAGGATGGGATCATATTATTTCGTGCTTGGAAAGCAACTCTAACATTTCCAAGGCAGCAATTGATTTGTTACATGAGTTGCTTCAAGAAAGATCTGGTTGGAATCAATGTTTTTGCAAAAAACTTTCTGAGAACGACACTGCAGTTTTTAACCTTGTAACCCTTGTGAAGGACCCTGGAAACGATTCAGCAGAGCTGGCGATGAAAATTTTGATGGAGCTTTTTGAAATAAATGAAAACAGCATTGTCACTGCTGCTAATTGTGGCTGGTATAAGCCACTAGCTGATCGCATGATTCGAGGACCTGATTCAAGAATGTCAATGGCAAAAGCCATAGTTAATTTGGAGTTGGATGATTTAAACTTGATGCAACTTGGAAAGGAAGGAGTTATAACTCCTTTGATAGAAATGCTGTCTGGCAGTATCGAATCGAAAGACCTTTCATTATCAGCTCTGGTTAAACTAGCTGGATCTCATCCCAACAAGGGAATCATTGCTTCATCTGGGGGTGTTCCTCTTATTCTAGGTTTAATGTTCTCTCCTCGGACAAGGTCATTCATTACAATTAAATGCTCCGAAATCCTCGAGAAACTTTCTTCTTCTGACGATGGAATTGATTTCTTTACTGATGGAGAAGGGAAACAACTTGAGTTAGATTCAATTATCACCAAATTGCTAGTTTTGCAACAGAGTTCCAACTCAGGCCACAATCTCCGTAAGCCCACCCTACGCGCTCTTCTTGGCATTTGCAAGTTCGAGACTGGTTTAGTGAAGAAAGCAATTCTTGCAGCCAATGGTGTATCTCTGATTCTTCCACTTCTTGATGATTCTGACTCAGAAGTCCGAGAGACTGCAATAAACCTGCTCTTTCTTTTCTCTCAGCATGAACCAGAAGGAGTAGTTGAATACCTTTTCAAGCCTAGAAGGCTAGAAGCTTTGATTGGATTCCTCGAGAACGACGACAATGATAACGTACAAATGGCTGCAGCTGGCTTACTAGCTAACCTACCAAAATCCGAACGAGAACTAACTACAAAGTTGATTGAAATGGGAGGACTTGATGCAATCATAAGCATTTTAAAAACAGGCAAAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGATCCTACAAATATCGAGTCACAACGCGATTTGGTTAAACGTGGAATATATCCTTTGCTTGTTGATTTTCTCAATACAGGTTCAGTCACTGCAAAGGCAATTGCAGCAGCTTTCATCGGAGATCTTTCTATGAGCACGCCAAAGCTCACAGTTATTTCCAAACCAAACGGTTGCTGGTTTTTCAAATCATCGCGCGTTCCTTTATGTGCAGCTCATGATAGCGTCTGCAGTGTGACCACAACATTTTGTCTATTGGAAGCGAATGCTTTACCTGGTTTGATAAAGCTGTTACATGGTGAGGTTCATGCAACTGCTTATGAAGCAATACAAACACTTTCTACATTGGTATTGGAAGAGCATCCGCAGAGGGGTGCTCGTTTGTTGCATGAGAAAAATGCAATGAGACCTTTATTGGAGATTTTGACTTGGGGTAGTGAGTCACTTAAGGCAGAAGCTTTAGGACTTTTGGAGAAGGTTTTTGTGTCAAAGGAAATGGTGGAATATTATGGAACGACGGCTAGATCGCGTTTGATTTGTTTGACCGGCAGTAATATTTATGGAGACGGACACCTTCGAAGGAAAGTTGCTAAGGTATTGTCATTGCTTGAACGTTATTCTAAGTCTTCATCATCTGCAATCTCTGGAGTTTTGGAGTGA 3042 0.4109 MVGLELIPIGTILTVVTSQVLRTAHAAADVLIGKESFKALSKYLFDIEPVLKELQLQELNDSQPARVALESLEADVKRANNMVEKYKNRGRFYLLVKCRSIVEEVEQVTRDIGRSLAALSIANTEVLSRISDQVDRLQGEMQRVEFEASQSQLEIVDKLNQGLRDQKQDQAFANDILEEIARAVGVPVEPSEIGKELASIRKEKEEAANRKEKAEFVFLEQIIKLLSRADAARDYEEVKNQYFERVQVIERYDSREKYIQPLKSFLCRINGAVMVDPVSLSTGTTCERSAIESWFYDGNRTDPETQEVLEDTSLRSNIPLRQSIEEWRELNYCLLIRSIRENLSLNSNLKESLSQMQALIAENSINKDWISIGEVTDTVISILGNSNDREVKMKILITLKDVVEGHARNKEKLAESQGWDHIISCLESNSNISKAAIDLLHELLQERSGWNQCFCKKLSENDTAVFNLVTLVKDPGNDSAELAMKILMELFEINENSIVTAANCGWYKPLADRMIRGPDSRMSMAKAIVNLELDDLNLMQLGKEGVITPLIEMLSGSIESKDLSLSALVKLAGSHPNKGIIASSGGVPLILGLMFSPRTRSFITIKCSEILEKLSSSDDGIDFFTDGEGKQLELDSIITKLLVLQQSSNSGHNLRKPTLRALLGICKFETGLVKKAILAANGVSLILPLLDDSDSEVRETAINLLFLFSQHEPEGVVEYLFKPRRLEALIGFLENDDNDNVQMAAAGLLANLPKSERELTTKLIEMGGLDAIISILKTGKMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVDFLNTGSVTAKAIAAAFIGDLSMSTPKLTVISKPNGCWFFKSSRVPLCAAHDSVCSVTTTFCLLEANALPGLIKLLHGEVHATAYEAIQTLSTLVLEEHPQRGARLLHEKNAMRPLLEILTWGSESLKAEALGLLEKVFVSKEMVEYYGTTARSRLICLTGSNIYGDGHLRRKVAKVLSLLERYSKSSSSAISGVLE* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2682 1013 Coils Coil 69 89 - -
Mtr1g2682 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Mtr1g2682 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Mtr1g2682 1013 SUPERFAMILY ARM repeat 378 715 IPR016024 -
Mtr1g2682 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Mtr1g2682 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Mtr1g2682 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Mtr1g2682 1013 SMART arm_5 799 839 IPR000225 GO:0005515
Mtr1g2682 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Mtr1g2682 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Mtr1g2682 1013 SMART arm_5 915 956 IPR000225 GO:0005515
Mtr1g2682 1013 SMART arm_5 712 754 IPR000225 GO:0005515
Mtr1g2682 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Mtr1g2682 1013 Gene3D - 863 981 IPR011989 -
Mtr1g2682 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 333 IPR013083 -
Mtr1g2682 1013 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
Mtr1g2682 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Mtr1g2682 1013 Gene3D - 9 123 IPR036537 GO:0007166
Mtr1g2682 1013 Coils Coil 127 154 - -
Mtr1g2682 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Mtr1g2682 1013 Gene3D - 516 848 IPR011989 -
Mtr1g2682 1013 Gene3D - 346 504 IPR011989 -
Mtr1g2682 1013 SUPERFAMILY ARM repeat 636 1000 IPR016024 -
Mtr1g2682 1013 Coils Coil 197 217 - -
Mtr1g2682 1013 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 724 752 IPR000225 GO:0005515
Mtr1g2682 1013 SUPERFAMILY RING/U-box 247 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2682 Mtr-Chr1 37885008 37889505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2682 263 965 U-box Gene Family AT1G76390 26.913 4.39e-35 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2682 - - gmx:100783638 1602.03