Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2680 ATGGAACCGCCATTACAACATCCTCCAACCCCCCGCCCTCCCACCATTCTCGGAAAATACCAACTAACCCGCCTCCTTGGCCGCGGCAGCTTCGCCAAAGTCTACAAAGCTCATTCCCTCCTCGACAACGCCACCACCGTCGCCGTCAAAATCATCGACAAGTCAAAAACCGTTGACGCCGCCATGGAGCCTCGCATTATCCGTGAAATCGACGCCATGCGCCGTCTCCAACACCACCCTAACATCCTCAAAATCCATGAAGTCATGGCTACAAAAACCAAAATCCATCTTATCGTTGAATTCGCCGCCGGTGGTGAGCTTTTCTCCGCTCTCTCCCGCCGTGGAAGATTCTCCGAATCCACCGCTCGTTTCTACTTTCAACAGCTTGTCTCTGCGTTACGTTTCTGCCACCGTAACGGCGTCGCTCACCGTGATCTTAAACCGCAAAATCTCCTCCTCGACGCCGATGGGAATCTCAAGGTTTCCGATTTCGGTCTCTCTGCTCTTCCTGAACATCTCAAAGACGGACTACTCCACACTGCTTGTGGTACGCCGGCGTACACTGCGCCGGAGATTCTCCGGCGTAGTGGCGGTTACGACGGATCAAAAGCCGACGCGTGGTCGTGTGGACTCATACTCTACGTACTTCTCGCCGGTTATCTTCCGTTTGACGATTTGAATATTCCGGCGATGTGTAAGAAGATTTCCCGGCGAGATTATCGGTTTCCGGATTGGGTTTCGAAACGTGCGCGTATTGTGATATATAGGTTACTTGACCCGAACCCGGAAACGCGAATGAGTTTGGAGGGTTTATTTGGCAATGAATGGTTTAAGAAATCGTTAAAACCCGAAGCTGAACCGGAAAAGAGTATATTCGGGTGTGATTATGGGAAGGAAGGGAAAAATTTAGGTTTGAATGCGTTTCATATAATATCTATGTCTTCGGGTTTGGATTTGAGTGGTTTATTTGAAACGACGTCGTCTTCTCAAGGTGGTAATAATAATAATACATGGAGGGAGAAGAGGTTTACTTCTAGTGCAAACATTGAAGTGGTGGGGGAAAAGGTGAAGGAAGTGGGAGGAGTTTTGGGGTTTAAGGTTGAGGTTGGGAAGAATAGTGCAATTGGATTGGTGAAAGGGAAGGTGGGTTTGGTAGTTGAAGTTTTTGAGATTGTGCCTTGTCAACTTGTTTTGGTGGCTGTTAAGGTGGTTGAGGGTGGTTTCGAGTTTGAGGATAATCATTGGGAGGATTGGAAAGTTGGTTTGCAAGATCTTGTGATTTCATGGCACAATGAAGAGTCTTCATGA 1308 0.4817 MEPPLQHPPTPRPPTILGKYQLTRLLGRGSFAKVYKAHSLLDNATTVAVKIIDKSKTVDAAMEPRIIREIDAMRRLQHHPNILKIHEVMATKTKIHLIVEFAAGGELFSALSRRGRFSESTARFYFQQLVSALRFCHRNGVAHRDLKPQNLLLDADGNLKVSDFGLSALPEHLKDGLLHTACGTPAYTAPEILRRSGGYDGSKADAWSCGLILYVLLAGYLPFDDLNIPAMCKKISRRDYRFPDWVSKRARIVIYRLLDPNPETRMSLEGLFGNEWFKKSLKPEAEPEKSIFGCDYGKEGKNLGLNAFHIISMSSGLDLSGLFETTSSSQGGNNNNTWREKRFTSSANIEVVGEKVKEVGGVLGFKVEVGKNSAIGLVKGKVGLVVEVFEIVPCQLVLVAVKVVEGGFEFEDNHWEDWKVGLQDLVISWHNEESS* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2680 435 SUPERFAMILY Protein kinase-like (PK-like) 16 288 IPR011009 -
Mtr1g2680 435 ProSiteProfiles Protein kinase domain profile. 20 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2680 435 CDD CIPK_C 306 423 - -
Mtr1g2680 435 SMART serkin_6 20 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2680 435 Pfam Protein kinase domain 20 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g2680 435 Gene3D Transferase(Phosphotransferase) domain 1 13 302 - -
Mtr1g2680 435 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165
Mtr1g2680 435 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 12 432 - -
Mtr1g2680 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Mtr1g2680 435 Pfam NAF domain 305 368 IPR004041 GO:0007165
Mtr1g2680 435 PANTHER SERINE/THREONINE KINASE 12 432 - -
Mtr1g2680 435 ProSitePatterns Protein kinases ATP-binding region signature. 26 50 IPR017441 GO:0005524
Mtr1g2680 435 Gene3D Kinase associated domain 1, KA1 303 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2680 Mtr-Chr1 37868427 37870138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2680 2 432 Miscellaneous Gene Families AT3G23000 56.164 1.21e-163 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Mtr1g2680 Pkinase 1.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2680 K12761 - gmx:100784173 608.216