Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2675 ATGGAAAACAAAGTTGCATATGAGAATGATCTCAACATGAAGGCTACTGAGCTAAGATTAGGACTTCCAGGGACAGAACAAAATGAAGAACAAAAAGCAAAAATTTCCAACAAAAGACCATTGACTGAAACTTCAAAGGATAGTGGTTCAAAAACTTCTGATGATGCAGCACCTCCTTCAAAGGCTAAGATAGTGGGGTGGCCACCAATAAGATCTTACAGGAAGAACAGTTTGCAAGAGGCTGAGGCTTCTGGGATTTATGTGAAAGTGAGTTTAGATGGAGCTCCTTACCTTAGGAAGATTGATTTGAGGGTCTATGGTGGCTATGCACAACTCCTCAAAGCTTTGGAAAGCATGTTCAAGTTAACCATAGGTAATTATTCTGAAAAAGAAGGTTATAAAGGATCTGAATATGAACCTACATATGAAGATAAAGATGGTGATTGGATGTTAGTTGGAGATGTTCCATGGGAGATGTTTGTGACTTCTTGCAAAAGACTAAGAATCATGAAAGGAACAGAAGCTAGAGGTGTTTGA 537 0.3873 MENKVAYENDLNMKATELRLGLPGTEQNEEQKAKISNKRPLTETSKDSGSKTSDDAAPPSKAKIVGWPPIRSYRKNSLQEAEASGIYVKVSLDGAPYLRKIDLRVYGGYAQLLKALESMFKLTIGNYSEKEGYKGSEYEPTYEDKDGDWMLVGDVPWEMFVTSCKRLRIMKGTEARGV* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2675 178 MobiDBLite consensus disorder prediction 16 63 - -
Mtr1g2675 178 SUPERFAMILY CAD & PB1 domains 76 171 - -
Mtr1g2675 178 Pfam AUX/IAA family 45 177 IPR033389 -
Mtr1g2675 178 MobiDBLite consensus disorder prediction 31 50 - -
Mtr1g2675 178 PANTHER AUXIN-INDUCED PROTEIN 10 178 - -
Mtr1g2675 178 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 178 IPR003311 GO:0005634|GO:0006355
Mtr1g2675 178 ProSiteProfiles PB1 domain profile. 85 172 IPR000270 GO:0005515
Mtr1g2675 178 Gene3D - 79 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2675 Mtr-Chr1 37796894 37798255 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2675 89 176 B3 DNA Binding Superfamily AT4G23980 32.955 6.05e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mtr1g2675 AUX_IAA 5.9e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2675 K14484 - gmx:100527777 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2460 1 35286994 35288520 Mtr1g2675 1 37796894 37798255 ECH
Mtr1g2675 1 37796894 37798255 Mtr1g2675 1 37796894 37798255 ECH