Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2673 ATGGCTACTATGGGGCATGGTTTGAACCTGAAGGAGACTGAGCTTTGTCTGGGTCTGCCTGGTGGTGGCGGCGGCGGCGGTGGAGGTGGCTCTGAGGTGGAAACTCCAAGGGCTTCTGGAAAGAGAGGTTTCTCTGAGACAGTTGATCTGAAGCTTAATCTTCAAACCAAGGAAGATCTGAATGAGAAGAGTGCTTCAAAGGAGAAGACCCTCCTTAAGGACCCTGCTAAGCCACCAGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCACAAAAGGTTAACAATACTGAGGACACTGAGAAGACAACAAGTAACACTACTGCTGCTGCTTTTGTTAAGGTTTCCATGGATGGAGCACCTTACCTTCGTAAGGTTGACTTGACAATGTACAAAACCTACAAAGATTTATCTGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCACTGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGCGACTGGATGCTCGTGGGAGATGTCCCATGGGAGATGTTTGTTGGATCATGCAAGCGTCTTCGCATAATGAAAGGATCAGAAGCTATTGGACTTGCACCAAGAGCAATGGAGAAATGCAAAAACCGAAGCTGA 711 0.4698 MATMGHGLNLKETELCLGLPGGGGGGGGGGSEVETPRASGKRGFSETVDLKLNLQTKEDLNEKSASKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVNNTEDTEKTTSNTTAAAFVKVSMDGAPYLRKVDLTMYKTYKDLSDALAKMFSSFTTGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKNRS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2673 236 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 5 229 - -
Mtr1g2673 236 Gene3D - 112 230 - -
Mtr1g2673 236 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 229 IPR003311 GO:0005634|GO:0006355
Mtr1g2673 236 MobiDBLite consensus disorder prediction 59 84 - -
Mtr1g2673 236 MobiDBLite consensus disorder prediction 59 75 - -
Mtr1g2673 236 Pfam AUX/IAA family 38 227 IPR033389 -
Mtr1g2673 236 SUPERFAMILY CAD & PB1 domains 113 217 - -
Mtr1g2673 236 ProSiteProfiles PB1 domain profile. 118 218 IPR000270 GO:0005515
Mtr1g2673 236 MobiDBLite consensus disorder prediction 19 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2673 Mtr-Chr1 37752696 37755738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2673 116 221 B3 DNA Binding Superfamily AT3G61830 32.075 1.07e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mtr1g2673 AUX_IAA 1.9e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2673 K14484 - gmx:547949 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2458 1 35254152 35257979 Mtr1g2673 1 37752696 37755738 ECH
Mtr1g2673 1 37752696 37755738 Mtr1g2673 1 37752696 37755738 ECH