Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr1g2658 | ATGGGACAAGGGCAATCGAAAAGCGAATTGCTCTACCAGCAAGTCAGTTATGGGAATTCCGATGGAATCAAAGCCCTTCATAGAGAAGGTGCAGGTCTTGAGTGGATGGATAGAGAAGGAAAGACACCCTTGATTGTTGCTTGTATGAATCCTGAGCTTTATAATGTTGCTAAGACTTTGATTGAACTTGGAGCCAATGTCAATGCGTACCGCCCTGGTCGTCATGCTGGATCTCCATTGCATCATGCAGCTAAAAGGGGACTTGAAAGCATTGTTAAGTTACTTCTTTTGCATGGAGCCAATCCTTTGCTCATGAATGATGATTGTCAAACTCCTCTTGAGGTTGCCCGGGCTAAAGGAAACAGCAATGTTGTTCGTGTAATTGAGAGTCATATATGCTTGTTCTCTGGTTGGCTGCGGGAGTTTCATGGACCTGGATTTCTAGAAGTTGTAGCTCCTAATTTGGTATCGAGAAAAGTTTGGGTGGTTGTTTTACCAGTAGGCTCCCGTGTTCTCACCACGCCTTACAAGTTGGAGCTTGCCGTATATGCTTCTTTGCAGGATGCACGACCCCGTACAATTATTCCTCTGTGGAAGGCCAACTTAGAAGAACCAAAGCTTCGTCAGTCGGATCCGTCAGTGGCAATTAGTGATAAGACTACCAGAACACGCCTTAAATTTGGGCCTGCAAGTGAGAATGACAGGCAACAACTTACTTGGTTTTCTAATGCTTGCAAAGGAATGCCGCAGGTAAGTCCAGTATTTTTGCATAATAATCTGCCTACAGTTCCACCAACAGCACCGCCTGATGCTGAAGACCCAGAATTGGCTATGGCTATCCAAGCATCTATTCAGCATGCTCTTCACGAGAGGCCAAGCTTTCCTGATGCCCAGCCAAACTCTGAAGCAAGCTCTTCCATCAACGGAGTGAGTGCAGTGCAAGGTTTTCTTGGCACTCCAAATATAAATGATAGTGAATCTGTAGCTGTTCCAGGTGGCAATACTCAACATGTCCAGAACGATGACAATGTCTCTGCTGGCCATACTACTAGCGGTCTGGATTTGAATCCATCAGCTCCTCCATTTGCTGATGATGTTCAATTAGATGGCCCGGTTCATTATCCGTCCATTGATTTGAGCCCTGTTGATGTATCATCATCTCCACTAGTTGAGAAGCTACCTAATGAAGAAGGGAAAACTGCTGGTGGAAGTGGTTCAACATGCGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAATGAGGTTAAAACAAAGAAATGGGGTTGCCCCGTTTGTCGAGCTAAGATAGACCAGATCATTAAGCTATATCACGTTTGA | 1380 | 0.4536 | MGQGQSKSELLYQQVSYGNSDGIKALHREGAGLEWMDREGKTPLIVACMNPELYNVAKTLIELGANVNAYRPGRHAGSPLHHAAKRGLESIVKLLLLHGANPLLMNDDCQTPLEVARAKGNSNVVRVIESHICLFSGWLREFHGPGFLEVVAPNLVSRKVWVVVLPVGSRVLTTPYKLELAVYASLQDARPRTIIPLWKANLEEPKLRQSDPSVAISDKTTRTRLKFGPASENDRQQLTWFSNACKGMPQVSPVFLHNNLPTVPPTAPPDAEDPELAMAIQASIQHALHERPSFPDAQPNSEASSSINGVSAVQGFLGTPNINDSESVAVPGGNTQHVQNDDNVSAGHTTSGLDLNPSAPPFADDVQLDGPVHYPSIDLSPVDVSSSPLVEKLPNEEGKTAGGSGSTCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQIIKLYHV* | 460 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr1g2658 | 459 | SUPERFAMILY | RING/U-box | 407 | 453 | - | - | |
| Mtr1g2658 | 459 | SMART | ring_2 | 408 | 446 | IPR001841 | - | |
| Mtr1g2658 | 459 | Pfam | Ankyrin repeats (many copies) | 60 | 116 | IPR002110 | GO:0005515 | |
| Mtr1g2658 | 459 | ProSiteProfiles | Ankyrin repeat profile. | 75 | 107 | IPR002110 | GO:0005515 | |
| Mtr1g2658 | 459 | ProSiteProfiles | Ankyrin repeat region circular profile. | 75 | 101 | - | - | |
| Mtr1g2658 | 459 | Gene3D | - | 3 | 135 | IPR036770 | - | |
| Mtr1g2658 | 459 | PANTHER | UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED | 1 | 459 | - | - | |
| Mtr1g2658 | 459 | PANTHER | ROLLING PEBBLES, ISOFORM B | 1 | 459 | - | - | |
| Mtr1g2658 | 459 | Pfam | Zinc finger, C3HC4 type (RING finger) | 406 | 453 | - | - | |
| Mtr1g2658 | 459 | SMART | ANK_2a | 75 | 104 | IPR002110 | GO:0005515 | |
| Mtr1g2658 | 459 | SMART | ANK_2a | 39 | 69 | IPR002110 | GO:0005515 | |
| Mtr1g2658 | 459 | SMART | ANK_2a | 108 | 137 | IPR002110 | GO:0005515 | |
| Mtr1g2658 | 459 | ProSiteProfiles | Zinc finger RING-type profile. | 408 | 447 | IPR001841 | - | |
| Mtr1g2658 | 459 | MobiDBLite | consensus disorder prediction | 328 | 362 | - | - | |
| Mtr1g2658 | 459 | MobiDBLite | consensus disorder prediction | 328 | 356 | - | - | |
| Mtr1g2658 | 459 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 387 | 458 | IPR013083 | - | |
| Mtr1g2658 | 459 | ProSiteProfiles | Ankyrin repeat profile. | 39 | 72 | IPR002110 | GO:0005515 | |
| Mtr1g2658 | 459 | ProSiteProfiles | Ankyrin repeat region circular profile. | 39 | 69 | - | - | |
| Mtr1g2658 | 459 | SUPERFAMILY | Ankyrin repeat | 9 | 133 | IPR036770 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr1g2658 | Mtr-Chr1 | 37607909 | 37614771 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr1g2658 | 398 | 456 | C3H Transcription Factor Family | AT3G06140 | 33.898 | 8.26e-09 | 55.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr1g2658 | - | - | gmx:100789309 | 684.485 |