Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2655 ATGTGCAACGGTTCGAATAGAAAACCTTGTCAAACTGGTTTGATAAGGGAAAATGAATGTGAAAGACAAGAAGAACATCATCATAAGATTTCAGCTTTGCTTGAGTTTTCAGCCAAAGATGATGTAATGGCGTTCACAGATGCAGTTGAGAAAGATGATCATAATGTTGATGAAGTAGGGTTATGGTATGGAAGGAAGGTTGGATCAAAGGAAATGGGATATGAAGAGAGGACACCTCTTATGGTAGCTGCTTTATATGGAAGCAAGGGTGTGTTGTCTTATATTCTCGGAACCGGTCGTGTTGATGTTAACCGAGTGTGTGGCTCAGATAGGGCTACCGCTCTTCGTTGTGCTGTTTCTGGTTGTTCTGCTGCTTCTGCCGAGGTTGTCAAACTTCTGCTTGATGCATCTGCAGATGTTAGTTCCGCTGATGCATATCGTAACCGGTGCAGCAACTTGGTTGTCTCGGTTTCTAATAGTCTCTACGGTTCAAGGAAGAGGATACTACAAGGGATACTAGAAGGGGTAGATGATGTTGATGACGAGGACGACAATTTCCTTAAGGAAATAGGTTTCCAAATGGTGGAGAAGCAACAAGACGTAGGTACACCTCACACCGAGAAGAAAGATTATCCCATTGATCCATCCCTACCTGACATAAAGAATGGAATATATAGTACAGATGAATTTAGGATGTTTACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCTGGGGAGAATGCAAGGCGCCGCGATCTGAGGAAATGTCATTACACATGTGTCCCTTGCCCCGAGTTTCGGAAGGGATCATGCAACAAAGGGGATGCTTCTGAATATGCACATGGTATTTTTGAATGCTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGCAAGGATGAAACTAGATGCACGAGAAGGGTTTGCTTTTTCGCTCACAAGCCAGAGGAGCTTCGACCGTTGTATGCTTCTACCGGTTCTGCTCTACCTTCACCTACATCATATTCAAATTCACCTAGTGCTTCTTCAATGGATTCTTTCACATTGAGCTCTCTGTCTTCTTTGATACAATCTGCGTCGACGCCACCTTTGACTCCATCTGCAGCATCATCGCCTACGGCTGGAACCATGTGGCAGACTCAGATTCAGCTTCATGCTGCAGTCCCTACCCTTCAGATGCCGAGAAGCAGATTTAAAACTGCAATGAATGTCAGAAATAATGCTGAATTTCTCAAACTTGAAAATCGCCTTACAGGTCTTCCATCTCCTTCAAATAGGCTTGCAGGAGTGAATCCTACTAACCTTGAAAACATTTTTGGGTCATCAATACAATCTCCGACATCAATACAGGTGCATCAGAGCACAAACCAGCAACTTTGGGGCAATCCTTTTGATCTTACCAATTCAAACGTGATTGGATCATCACAATTTAGAGTTGATGCCTTTTCGAAGCGTAGCCAAAGCTTTATTGAGTGCAGCAGCATGGCGAGATTTAATTCCGAGCTTCCTTCTGCTAGCTCAGTTGCCATGGAACCTTCTGCCTTCTCTGGTTGGGGCTCTCCTGATGGAAAATTAGACTGGTCCATCCGCGGCAATGAACTCAATAACATGAGGAAATCTATTTCTTTCGGCTTTCAAAACAGAAGTAGCACTTCAACAATGGCTGCTGCATTAAGTTCAGTTGCCATGGAACCTTCTGCCTTCTCTGGTTCGGGCTCTCCTGATGGAAAATTAGACTGGTCCATCCGCGGCGATGAACTCAATAAAATGAGGAAATCTTATTCTTTCGGATTTCGCAACAGAAGTAGCACTTCAACAATGGCTGCTGCATCAAGTGTCGATGATCCAGATGTGTTTTTAAGCCATGAATCTTGGGTTAATTCACTTGTGGAGGATGGTCCAACAATGGAATTTGATCAACATTGA 1962 0.4373 MCNGSNRKPCQTGLIRENECERQEEHHHKISALLEFSAKDDVMAFTDAVEKDDHNVDEVGLWYGRKVGSKEMGYEERTPLMVAALYGSKGVLSYILGTGRVDVNRVCGSDRATALRCAVSGCSAASAEVVKLLLDASADVSSADAYRNRCSNLVVSVSNSLYGSRKRILQGILEGVDDVDDEDDNFLKEIGFQMVEKQQDVGTPHTEKKDYPIDPSLPDIKNGIYSTDEFRMFTFKVKPCSRAYSHDWTECPFVHPGENARRRDLRKCHYTCVPCPEFRKGSCNKGDASEYAHGIFECWLHPAQYRTRLCKDETRCTRRVCFFAHKPEELRPLYASTGSALPSPTSYSNSPSASSMDSFTLSSLSSLIQSASTPPLTPSAASSPTAGTMWQTQIQLHAAVPTLQMPRSRFKTAMNVRNNAEFLKLENRLTGLPSPSNRLAGVNPTNLENIFGSSIQSPTSIQVHQSTNQQLWGNPFDLTNSNVIGSSQFRVDAFSKRSQSFIECSSMARFNSELPSASSVAMEPSAFSGWGSPDGKLDWSIRGNELNNMRKSISFGFQNRSSTSTMAAALSSVAMEPSAFSGSGSPDGKLDWSIRGDELNKMRKSYSFGFRNRSSTSTMAAASSVDDPDVFLSHESWVNSLVEDGPTMEFDQH* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2655 653 PANTHER UNKEMPT FAMILY MEMBER 18 563 IPR045234 -
Mtr1g2655 653 PANTHER UNKEMPT FAMILY MEMBER 566 648 IPR045234 -
Mtr1g2655 653 Gene3D - 12 185 IPR036770 -
Mtr1g2655 653 ProSiteProfiles Zinc finger C3H1-type profile. 274 296 IPR000571 GO:0046872
Mtr1g2655 653 SUPERFAMILY Ankyrin repeat 36 145 IPR036770 -
Mtr1g2655 653 Gene3D - 270 332 - -
Mtr1g2655 653 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 18 563 - -
Mtr1g2655 653 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 566 648 - -
Mtr1g2655 653 SMART ANK_2a 75 105 IPR002110 GO:0005515
Mtr1g2655 653 SMART ANK_2a 110 142 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2655 Mtr-Chr1 37567495 37569456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2655 25 609 C2H2 Transcription Factor Family AT5G12850 41.176 3.57e-133 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2655 - - mtr:MTR_1g075890 1225.69