Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2635 ATGTATAATTTAATGCACTGTGACATAACTGTTACAACGACAAATTGTTTGAAAACTTGTAACATAACAACCAGTCAAACTCATGAAAACATTGAAAATTACCAAAACAGACAAATAAAAGGTTGTTGTAGAAAGTATTTTCAGCTTTGGATTCTTTGCTTAACAAGAGAAAAAAATCATTGTTACACTTTCATTGAAAGTAGCATGAGAGCTAAGAGTTTGATAAGTAAGAAAAAGTTTAGCATTAGAAGGGAATTGAGGAAGATGATAAAGTGTGTGTGTTCAAAGGAGAAGTTAAGTGTAGATGAACTGAATTATTCATCAGAGTCCCTTGCAACTAGGGATTATTCAGCAACAGCAAGTGGTTATTCATCTCGTCCAGGTGAAAATGATACAAAGTTGGATAATAGTAACATTGAAGAAGCAGAATCATCTCTACGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCCTTGTTAGGAAGACTTGAGTATCAAAAAGGCAACATTGAAGCTGCACTTCATGTATTTGAAGGAATAGATATTGCTGCTGTCATTCCAAAGATGAAAATGTCTATATCTAGAAAATGTGAATCCAATAATAAACGCAGTCCACAACGTGATTCAGTGCCTTCTATGTCGATACATGCTGTTAGTTTACTTCTTGAAGCTTTTTTTCTCAAGGCTAAATCATTGCAAACTCTTGGAAGGTTTCAAGAAGCTGCTCAATCTTGCAAAACTATTTTAGACACAGTTGAGTCTGCATTACCAGAAGGTTGGCCCGAAAACTTTGTTTCAGATTGTAAATTACAAGAGATAGTAACAAATTCTGTAGAACTGCTTCCGGAGTTATGGAACCTCGCAGGCTCACCTCAAGATGTTATCTTATCATTTAGGAAAGCCTTGCTTTATCATTGGAATCTTGACACTGAATCAACTGCAAGAATACAAAAGGAATTTGCTTTGTTTCTTTTGTACAGCGGCTACGAAGCGGACTCTCCTTCGCTTCGCTCTCAATTGAACGGTTCGTTTGTGCCAAGAAACAACATAGAAGAAGCTGTTCTTCTACTTCTGATTCTGCTGAGAAATTCTAAAGATCGCTCAATAATTCATCACCTTTCTTTCGCGCTGAGTGTTTGTGGTGAATTCATGACACTAGCTCAACAAGTTGAGGAATTACTTCCAGAAACAATGGAGAGAAGAGAAAGATATTACACTCTAGCTCTTTGTTACTGTGGTAAAGGTGAGCATATAGTTGCTTTGGATCTTTTGAGGAACCTATTGAAAAATAGAGAGAACTCGGTATACTCGGATTGCATAGAGGAATTGCTATTAGCTTCAAAAATTTGTGCAGACAACAAGGTTTGTATCGAAGACGGAATCAAATTTTCAAGCAAGGCAATTTCTCAAATGCATGGAAAGTGTAATCAAATAGAAGCTATTGCAAATTGTTTACTAGGTGTTCTACTGTCAGCAAAATCGAAGTCAGTTACTTCTGAATCAGAGAAAGTTTTGATACAATCTCAAGCATTCAGTGCTTTAAAAGCTTCTGAGAAATTGATGAAGGAAAATGATCCTTACATTGTTCTTAATCTTTGTCTAGAATATGCTGAGCATAGAAAGTTGAGAATTGCTTATGATCACGCAAAGAAACTGATTAAGCTGGAAGGTGGATCGAGTATTAGCGGATATATACTACTAGCGCGGATTTTATCGGCTCAAAAAAAGTTTGTTGATGCGGAGATTGTTATTGATGCTGCTTTAGATCAAAGCGGAAAATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAGATTCAGATTGCACAAGGAAGATTAAAAAATGCTATTGAGACATACACTTTTTTTCTTGCGATTCTTCAAGTCCATAATAAAAATCTAGGAACTGCAAATAAGGTTATGAAGTGTAAGAGAAATCGTGACAGAAGACTAGAAGTGGAAGTTTGGCATGATTTAGCCAATGTGTACACAGCCTTGTCGCGGTGGCATGATGCCGAAATTTGTCTTGCTAAATCTCAGGCTATTGATCCATATTCCGCTTCTAGATTGCACTCCACAGGTTTACTTAATGAAGCAAGAGGTCTTCATCAAGAAGCATTGAAATCATATAAAAAAGCATTAGATATTGAGCCAAACCATGTGGCAAGTTTGATATCAACAGCTTGTGTTCTGAGAAAACTTGGCGGTCAATCATCATCTTTAATTGTTAGAAGCCTTCTCACCGATGCATTAAAGCTTGACACAACAAATTCATCTGCATGGTACAATCTTGGACTTCTCTACAAAGCTGATTTGGGAACATCAGCATTGGAAGCTGCTGAATGCTTTGAAACAGCTGTTTTTCTTGAAGAATCATCTCCCATTGAACCCTTTAGATAA 2403 0.3658 MYNLMHCDITVTTTNCLKTCNITTSQTHENIENYQNRQIKGCCRKYFQLWILCLTREKNHCYTFIESSMRAKSLISKKKFSIRRELRKMIKCVCSKEKLSVDELNYSSESLATRDYSATASGYSSRPGENDTKLDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVIPKMKMSISRKCESNNKRSPQRDSVPSMSIHAVSLLLEAFFLKAKSLQTLGRFQEAAQSCKTILDTVESALPEGWPENFVSDCKLQEIVTNSVELLPELWNLAGSPQDVILSFRKALLYHWNLDTESTARIQKEFALFLLYSGYEADSPSLRSQLNGSFVPRNNIEEAVLLLLILLRNSKDRSIIHHLSFALSVCGEFMTLAQQVEELLPETMERRERYYTLALCYCGKGEHIVALDLLRNLLKNRENSVYSDCIEELLLASKICADNKVCIEDGIKFSSKAISQMHGKCNQIEAIANCLLGVLLSAKSKSVTSESEKVLIQSQAFSALKASEKLMKENDPYIVLNLCLEYAEHRKLRIAYDHAKKLIKLEGGSSISGYILLARILSAQKKFVDAEIVIDAALDQSGKWDQGELLRTKAKIQIAQGRLKNAIETYTFFLAILQVHNKNLGTANKVMKCKRNRDRRLEVEVWHDLANVYTALSRWHDAEICLAKSQAIDPYSASRLHSTGLLNEARGLHQEALKSYKKALDIEPNHVASLISTACVLRKLGGQSSSLIVRSLLTDALKLDTTNSSAWYNLGLLYKADLGTSALEAAECFETAVFLEESSPIEPFR* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2635 800 PANTHER PROTEIN NPG1 81 800 IPR043376 -
Mtr1g2635 800 SUPERFAMILY TPR-like 393 621 IPR011990 GO:0005515
Mtr1g2635 800 PANTHER OS10G0471400 PROTEIN 81 800 - -
Mtr1g2635 800 Gene3D Tetratricopeptide repeat domain 499 640 IPR011990 GO:0005515
Mtr1g2635 800 Gene3D Tetratricopeptide repeat domain 641 796 IPR011990 GO:0005515
Mtr1g2635 800 SUPERFAMILY TPR-like 599 770 IPR011990 GO:0005515
Mtr1g2635 800 Pfam Tetratricopeptide repeat 698 721 IPR019734 GO:0005515
Mtr1g2635 800 SMART tpr_5 688 721 IPR019734 GO:0005515
Mtr1g2635 800 SMART tpr_5 654 687 IPR019734 GO:0005515
Mtr1g2635 800 SMART tpr_5 223 256 IPR019734 GO:0005515
Mtr1g2635 800 SMART tpr_5 402 435 IPR019734 GO:0005515
Mtr1g2635 800 SMART tpr_5 562 595 IPR019734 GO:0005515
Mtr1g2635 800 SMART tpr_5 598 631 IPR019734 GO:0005515
Mtr1g2635 800 Gene3D Tetratricopeptide repeat domain 106 491 IPR011990 GO:0005515
Mtr1g2635 800 ProSiteProfiles TPR repeat profile. 688 721 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2635 Mtr-Chr1 37347388 37351657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2635 82 800 Calmodulin-binding Proteins AT4G28600 50.746 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2635 K21843 - gmx:100789469 1125.15