Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2605 ATGGATTCAAGTTCAACCTCAATTCCAAACTCTTCCACTTCAGATTTTTCATCAGAATCCTCCTCCTATGAATTCAACTATCTTCCTTTCAACGAGAACGATCCTGAAGAGATGCTTCTCTACGGCATGATCAACGACGCTAACAACCTCAACAAAACTACAGTGAAGGAAGAAGAGGTAAGTTCAGAAGAGAACGAACCAAGGAAGGAGAAGTCGTACCGAGGTGTAAGGAGAAGACCATGGGGGAAATTTGCAGCAGAGATAAGAGATTCGACGAGGAATGGAATGAGGGTGTGGCTAGGAACCTTTGATAGTGCAGAAGCTGCTGCTTTGGCTTATGATCAAGCAGCTTTTTCCATGAGAGGTTCTTCTGCAATACTCAATTTTCCTGTTGAGATTGTTAGAGAATCGCTTAGTGATATGAATTGTGATGATGGTTCTGAAGATGGGTGTTCCCCTGTTGTTGCTCTTAAGAGAAAACATTCTTTGAGAAGAAAGATTGGTTTCAAGAAGAACAAAGAGAGAGATTTTAGGAGCAATAAAAGTAGTGTTGATAATGCTGTTGTGTTTGAAGATCTTGGTGCTGATTATTTGGAACAATTGTTGATTTCATCTGATGAGTTTCCATATCCTCCTCAGTGA 642 0.405 MDSSSTSIPNSSTSDFSSESSSYEFNYLPFNENDPEEMLLYGMINDANNLNKTTVKEEEVSSEENEPRKEKSYRGVRRRPWGKFAAEIRDSTRNGMRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVEIVRESLSDMNCDDGSEDGCSPVVALKRKHSLRRKIGFKKNKERDFRSNKSSVDNAVVFEDLGADYLEQLLISSDEFPYPPQ* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2605 213 CDD AP2 71 131 IPR001471 GO:0003700|GO:0006355
Mtr1g2605 213 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Mtr1g2605 213 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Mtr1g2605 213 SUPERFAMILY DNA-binding domain 72 132 IPR016177 GO:0003677
Mtr1g2605 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 23 204 - -
Mtr1g2605 213 MobiDBLite consensus disorder prediction 1 21 - -
Mtr1g2605 213 Gene3D AP2/ERF domain 71 132 IPR036955 GO:0003700|GO:0006355
Mtr1g2605 213 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
Mtr1g2605 213 PANTHER DNA-BINDING DOMAIN 23 204 IPR044808 GO:0003700|GO:0009873
Mtr1g2605 213 MobiDBLite consensus disorder prediction 54 74 - -
Mtr1g2605 213 MobiDBLite consensus disorder prediction 54 73 - -
Mtr1g2605 213 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Mtr1g2605 213 PRINTS Ethylene responsive element binding protein signature 112 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2605 Mtr-Chr1 36981884 36983228 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2605 28 206 AP2-EREBP Transcription Factor Family AT3G23240 65.000 2.20e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g2605 AP2 7.7e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2404 1 34623971 34624826 Mtr1g2605 1 36981884 36983228 ECH
Mtr1g2605 1 36981884 36983228 Mtr1g2605 1 36981884 36983228 ECH