Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2602 ATGAGTGGATCAAGGGGAGGAGCCAAGAACAACGGCGGACCTGTCCAGTACCGAGGTGTTCTCTACACACCTTGGGGAAAGTTTGCAGCCGGGATTCGTGACCCCAACAGGGAGGGTCGGAAGTTGTGGATTGGATGTTTCCACACTGCTGATGAAGCGGCTAGAGCTTATGATAGAGCTGCTTATAATATGAGTGGTTCATCTGCAATCCTCAATTTCCCAAATGAGTACAATATGGCTTCTCACGCTGGTTCAACATCTTCAAACAATGTGTTTAAGTTTGAATACTTGGATCTTGATAACTGGTTGGACTTGTTGGAGGTGGTTGTTGATCATGCGGAGAAAAATAATAAGGGACCCTGA 363 0.4628 MSGSRGGAKNNGGPVQYRGVLYTPWGKFAAGIRDPNREGRKLWIGCFHTADEAARAYDRAAYNMSGSSAILNFPNEYNMASHAGSTSSNNVFKFEYLDLDNWLDLLEVVVDHAEKNNKGP* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2602 120 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Mtr1g2602 120 PANTHER DNA-BINDING DOMAIN 17 98 IPR044808 GO:0003700|GO:0009873
Mtr1g2602 120 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Mtr1g2602 120 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Mtr1g2602 120 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Mtr1g2602 120 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Mtr1g2602 120 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF095 17 98 - -
Mtr1g2602 120 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Mtr1g2602 120 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2602 Mtr-Chr1 36951063 36951425 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2602 2 98 AP2-EREBP Transcription Factor Family AT5G43410 50.000 4.03e-29 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g2602 AP2 4.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2602 - - mtr:MTR_1g074280 233.802