Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2601 ATGAGTGGATCAAGGGGAGGAGCCAAGAACAACGGTGGACATGTCCAATACCGAGGCGTTCTCTACACGCCTTGGGGAAAGTTTGCCGCCGGGGTTCGTGACCCCAACAGGGAGGGTCGGAAGCTGTGGTTTGGATGTTTCAACACTGCTGATGAAGCGGCTAGAGCTTATGATAGAGCTGCTTATAATATGAGTGGTTCATCTGCCATCCTCAATTTCCCAAATGAGTACAATATGGCTTCTCATGCTGGTTCAACATCTTCAAGCAATGTGTTTGCGTTTGAATACTTGGATCTTGATAACTGGTTAGACTTGTTGGAGGTGGTTGTTGATCATGCAGAGAAAAATAATAGGGGACCCTAA 363 0.4683 MSGSRGGAKNNGGHVQYRGVLYTPWGKFAAGVRDPNREGRKLWFGCFNTADEAARAYDRAAYNMSGSSAILNFPNEYNMASHAGSTSSSNVFAFEYLDLDNWLDLLEVVVDHAEKNNRGP* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2601 120 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Mtr1g2601 120 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Mtr1g2601 120 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Mtr1g2601 120 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Mtr1g2601 120 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Mtr1g2601 120 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF095 17 98 - -
Mtr1g2601 120 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Mtr1g2601 120 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Mtr1g2601 120 PANTHER DNA-BINDING DOMAIN 17 98 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2601 Mtr-Chr1 36943003 36943365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2601 5 98 AP2-EREBP Transcription Factor Family AT5G43410 49.541 3.50e-29 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g2601 AP2 1.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2601 - - mtr:MTR_1g074280 246.514