Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2600 ATGAGTGAAGACGGATCAAGGGAAGGGACCAAAGACGACGGCGGATATGTCAAGTACCGAGGCGTTCGTGACTCCAATAGGAAAGGTCAGAATAAGGTGTGGCTAGGAACTTTCAACACTGCTGAGGAAGCAGCTAGAGCTTATGATAGAGATGCTTTTAATATGAGGGGTTTTTTAGCAATCCTAAATTTCCCAAATCAGTACAATATGTTTGCTGGTGCTGCTTCTGATGCCGCTTCAGGTTCTGGTTCATCATCTTCAAGGATTGCTAATGCTGGCAATGGAAGAGTGTTTGATTTTGAGTACCTGGATGATAATTTATTGGAGGATCTTCTTGATGATAATTTATTTTGA 354 0.4181 MSEDGSREGTKDDGGYVKYRGVRDSNRKGQNKVWLGTFNTAEEAARAYDRDAFNMRGFLAILNFPNQYNMFAGAASDAASGSGSSSSRIANAGNGRVFDFEYLDDNLLEDLLDDNLF* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2600 117 Pfam AP2 domain 24 57 IPR001471 GO:0003700|GO:0006355
Mtr1g2600 117 SMART rav1_2 18 71 IPR001471 GO:0003700|GO:0006355
Mtr1g2600 117 ProSiteProfiles AP2/ERF domain profile. 18 65 IPR001471 GO:0003700|GO:0006355
Mtr1g2600 117 CDD AP2 18 67 IPR001471 GO:0003700|GO:0006355
Mtr1g2600 117 MobiDBLite consensus disorder prediction 1 22 - -
Mtr1g2600 117 PANTHER DNA-BINDING DOMAIN 21 114 IPR044808 GO:0003700|GO:0009873
Mtr1g2600 117 SUPERFAMILY DNA-binding domain 19 66 IPR016177 GO:0003677
Mtr1g2600 117 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 21 114 - -
Mtr1g2600 117 Gene3D AP2/ERF domain 17 67 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2600 Mtr-Chr1 36938419 36938772 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2600 22 113 AP2-EREBP Transcription Factor Family AT3G23230 55.000 1.99e-24 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g2600 AP2 1.8e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2600 - - adu:107466315 93.2041