Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2599 ATGAGTGAAGATGGACCAAGGAGAGAGGCCACAGACGGCGGCGGACATGTCAAGTACCAAGGCGTGCGCCGCCGGCCATGGGGAAAGTTTGCAGCCGAGATTCGTGACTCCAATAGGAAAGGTCAGAATAAGGTGTGGCTAGGAACTTTCAACACTGCTGAGGAAGCAGCTAGAGCTTATGATAGAGATGCTTTTAATATGAGGGGTTTTTTAGCAATCCTAAATTTCCCAAATCAGTACAATATGTTTGCTGGTGCAGCTTCTGATTCTGGTTCATCATCTTCAAGGATTGCAAATGCTGGCAATGGAAGTCAAGTGTATGAGTTTGAGTACCTGGATGATAATTTATTGGAGGATCTTCTTGATGTTGAGGGGAAAAAGAATACAGGACCCTGA 396 0.4545 MSEDGPRREATDGGGHVKYQGVRRRPWGKFAAEIRDSNRKGQNKVWLGTFNTAEEAARAYDRDAFNMRGFLAILNFPNQYNMFAGAASDSGSSSSRIANAGNGSQVYEFEYLDDNLLEDLLDVEGKKNTGP* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2599 131 Pfam AP2 domain 18 69 IPR001471 GO:0003700|GO:0006355
Mtr1g2599 131 PANTHER DNA-BINDING DOMAIN 12 125 IPR044808 GO:0003700|GO:0009873
Mtr1g2599 131 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
Mtr1g2599 131 ProSiteProfiles AP2/ERF domain profile. 18 77 IPR001471 GO:0003700|GO:0006355
Mtr1g2599 131 Gene3D AP2/ERF domain 17 79 IPR036955 GO:0003700|GO:0006355
Mtr1g2599 131 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Mtr1g2599 131 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Mtr1g2599 131 PANTHER OS09G0571700 PROTEIN 12 125 - -
Mtr1g2599 131 MobiDBLite consensus disorder prediction 1 23 - -
Mtr1g2599 131 CDD AP2 18 79 IPR001471 GO:0003700|GO:0006355
Mtr1g2599 131 SMART rav1_2 18 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2599 Mtr-Chr1 36932835 36933247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2599 16 127 AP2-EREBP Transcription Factor Family AT3G23230 56.098 7.27e-37 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g2599 AP2 4.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2599 - - jre:108986161 131.339